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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQN
LPASYNYCRLVSRSLTVRSSTLPGGVLNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLPTSY
DLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQSGGVTITLFSANIDAITSLSIGGELVFHTSVH
GLALDATIYLIGFDGTTVITRAVASDNGLTTGIDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSASGSL
AVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERERLGIKTV
WPTREYTDFREYFMEVA

The query sequence (length=417) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2gsy:E 433 419 0.9736 0.9376 0.9690 0.0 2df7:A, 2df7:F, 2df7:B, 2df7:C, 2df7:E, 2df7:L, 2df7:G, 2df7:K, 2df7:M, 2df7:H, 2df7:N, 2df7:O, 2df7:I, 2df7:J, 2df7:Q, 2df7:P, 2df7:R, 2df7:S, 2df7:T, 2gsy:A, 2gsy:B, 2gsy:C, 2gsy:J, 2gsy:D, 2gsy:F, 2gsy:I, 2gsy:K, 2gsy:G, 2gsy:H, 2gsy:N, 2gsy:L, 2gsy:M, 2gsy:R, 2gsy:O, 2gsy:P, 2gsy:Q, 2gsy:S, 2gsy:T
2 3pzc:B 276 54 0.0408 0.0616 0.3148 0.87 3mey:B, 3mf1:B
3 4gyj:A 618 77 0.0576 0.0388 0.3117 1.2 3bmx:A, 3bmx:B, 4gyj:B, 4gyk:A, 3nvd:A, 3nvd:B
4 7rk5:B 501 82 0.0480 0.0399 0.2439 3.3 7rk5:A
5 5jrk:A 695 78 0.0456 0.0273 0.2436 3.4 5jrk:B
6 2cb3:C 173 84 0.0552 0.1329 0.2738 4.8 2cb3:A, 2cb3:B, 2cb3:D
7 5xgu:A 631 83 0.0576 0.0380 0.2892 5.5 5xgu:B
8 2anl:A 327 71 0.0432 0.0550 0.2535 9.8 2anl:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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