Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAWVIFKEVSSATNALRSMQGFPFYDKPM
RIQYAKTDSDIIAKM

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pkd:B 240 92 0.9368 0.3708 0.9674 1.97e-60 1aud:A, 7b0y:c, 3bo2:A, 3bo3:A, 3bo4:A, 4c4w:A, 4c4w:E, 3cul:A, 3cul:B, 3cun:A, 3cun:B, 7d7v:C, 5ddo:G, 5ddo:C, 5ddp:D, 5ddp:C, 5ddq:D, 5ddq:C, 5ddr:D, 5ddr:C, 7dlz:A, 7dlz:B, 1drz:A, 7dwh:A, 7dwh:B, 1dz5:A, 1dz5:B, 3egz:A, 5fj4:A, 5fj4:E, 3g8s:A, 3g8s:B, 3g8s:C, 3g8s:D, 3g8t:A, 3g8t:B, 3g8t:C, 3g8t:D, 3g96:A, 3g96:B, 3g96:C, 3g96:D, 3g9c:A, 3g9c:B, 3g9c:C, 3g9c:D, 8gxb:C, 8gxb:D, 8gxb:F, 8gxc:C, 8gxc:D, 8gxc:F, 3hhn:B, 3hhn:D, 3iin:A, 3irw:P, 3iwn:C, 3iwn:D, 8jy0:A, 8jy0:C, 8jy0:E, 3k0j:A, 3k0j:B, 3l3c:A, 3l3c:B, 3l3c:C, 3l3c:D, 6las:E, 6las:D, 6las:C, 6lau:E, 6lau:D, 6lau:C, 6lax:D, 6lax:E, 6lax:C, 6laz:D, 6laz:E, 6laz:C, 1m5k:C, 1m5k:F, 1m5o:C, 1m5o:F, 1m5p:C, 1m5p:F, 1m5v:C, 1m5v:F, 3mum:P, 3mur:P, 3mut:P, 3muv:P, 3mxh:P, 2nz4:A, 2nz4:B, 2nz4:C, 2nz4:D, 2oih:A, 2oj3:A, 3p49:B, 4pr6:A, 4prf:A, 7qr3:A, 7qr3:B, 7qr4:A, 6qx9:1A, 3r1h:A, 3r1h:D, 3r1l:A, 3r1l:D, 1sj3:P, 1sj4:P, 1sjf:A, 6sqn:A, 6sqn:B, 6sqn:C, 6sqq:AAA, 6sqq:BBB, 6sqq:CCC, 1u6b:A, 3ucu:P, 3ucz:P, 3ud3:P, 3ud4:P, 1urn:A, 1urn:B, 1urn:C, 1vbx:A, 1vby:A, 1vbz:A, 1vc0:A, 1vc5:A, 1vc6:A, 7vpx:M, 4w90:B, 4w92:B, 1zzn:A
2 6xh2:A 93 91 0.8526 0.8710 0.8901 4.38e-56 6cmn:A, 3k0j:D, 3k0j:C, 6xh0:A, 6xh1:A, 6xh3:A
3 7abg:B 169 91 0.7053 0.3964 0.7363 3.92e-49 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
4 7abg:B 169 83 0.2632 0.1479 0.3012 1.6 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
5 6f4h:C 96 93 0.7474 0.7396 0.7634 1.47e-43 6f4g:B, 6f4g:E, 6f4h:A, 6f4h:E
6 8ro1:p 76 76 0.5579 0.6974 0.6974 8.50e-39
7 3jb9:k 89 87 0.4000 0.4270 0.4368 2.22e-24
8 7b9v:Y 88 89 0.2842 0.3068 0.3034 3.77e-14 6bk8:r, 7dco:p, 6exn:Y, 6g90:Y, 5gmk:a, 6j6g:a, 6j6h:a, 6j6n:a, 6j6q:a, 5lj3:Y, 5lj5:Y, 5mq0:Y, 5nrl:Y, 7oqb:Y, 7oqe:Y, 5wsg:X, 5y88:p, 5ylz:p, 5zwm:p, 5zwo:p
9 3lqv:B 115 67 0.2421 0.2000 0.3433 2.16e-08 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
10 2mb0:B 95 88 0.2737 0.2737 0.2955 1.91e-07
11 7q33:A 93 86 0.2316 0.2366 0.2558 3.80e-06 6pai:D, 6q0r:D, 6q0v:D, 6q0w:D, 6sj7:C, 6ud7:C, 6ue5:C
12 2leb:A 101 88 0.2211 0.2079 0.2386 2.06e-05 2lec:A
13 7zew:A 117 80 0.2737 0.2222 0.3250 5.10e-05 7zex:A
14 5mqf:o 223 85 0.2842 0.1211 0.3176 9.56e-05 6id1:y, 7w59:y, 7w5a:y, 7w5b:y
15 2mkc:A 118 86 0.2211 0.1780 0.2442 2.06e-04 2my3:A
16 7dco:X 128 86 0.2211 0.1641 0.2442 3.22e-04 5gm6:V, 5zwm:X
17 7qde:B 169 65 0.2000 0.1124 0.2923 3.32e-04 7qdd:B
18 4ed5:B 169 66 0.2211 0.1243 0.3182 0.001 4ed5:A
19 8xxm:3G 84 83 0.2211 0.2500 0.2530 0.002 5k0y:O, 8pj1:o, 8pj2:o, 8pj3:o, 8pj4:o, 8pj5:o, 8pj6:o
20 2rra:A 99 66 0.1895 0.1818 0.2727 0.003 2kxn:B
21 7s7b:C 79 80 0.2000 0.2405 0.2375 0.006 7s7b:G, 7s7c:C
22 6dg0:B 84 82 0.2526 0.2857 0.2927 0.010 6dg0:A
23 8h6e:4R 106 80 0.2316 0.2075 0.2750 0.011 8h6j:4R, 8qp8:R, 8qp9:R, 8qpk:R, 6qw6:R, 6qx9:R, 8qxd:R, 8r08:R, 8r0a:R
24 5ith:A 80 83 0.2421 0.2875 0.2771 0.011 5o3j:A
25 2yka:A 124 84 0.2211 0.1694 0.2500 0.013
26 8i0v:4 161 80 0.2316 0.1366 0.2750 0.014
27 8i0v:4 161 86 0.2105 0.1242 0.2326 0.093
28 1fje:B 175 81 0.2632 0.1429 0.3086 0.029 1rkj:A
29 7csz:A 175 68 0.2526 0.1371 0.3529 0.030
30 2adb:A 127 64 0.2211 0.1654 0.3281 0.068 3zzy:A, 3zzy:B, 3zzz:A, 3zzz:B
31 2mgz:B 105 46 0.1684 0.1524 0.3478 0.092 4ch1:A, 4cio:A, 2ru3:A
32 8pj1:1 588 53 0.1579 0.0255 0.2830 0.13 6fec:w, 2krb:A, 8oz0:I, 8pj2:1, 8pj3:1, 8pj5:1, 8pj6:1
33 8xxn:3B 536 53 0.1579 0.0280 0.2830 0.16 6zon:B, 6zp4:B, 6zvj:B
34 3d34:B 215 27 0.1158 0.0512 0.4074 0.24 3d34:A
35 2mxy:A 105 41 0.1474 0.1333 0.3415 0.28 2mz1:A
36 4bs2:A 174 50 0.1263 0.0690 0.2400 0.46 4iuf:A, 4y00:A, 4y00:B, 4y00:C, 4y00:D, 4y0f:A, 4y0f:B
37 6g90:A 99 52 0.1684 0.1616 0.3077 0.60
38 2bkb:A 192 52 0.1579 0.0781 0.2885 0.91 2bkb:B, 2bkb:C, 2bkb:D, 1isa:A, 1isa:B, 1isb:A, 1isb:B, 1isc:A, 1isc:B, 2nyb:A, 2nyb:B, 2nyb:C, 2nyb:D, 1za5:A, 1za5:B
39 2n82:B 104 46 0.1368 0.1250 0.2826 0.93 2err:A, 7vrl:B
40 7evo:D 200 78 0.2000 0.0950 0.2436 1.2 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A
41 8pv1:CI 152 68 0.2105 0.1316 0.2941 1.2 8i9p:CI, 8i9r:CI, 8i9t:CI, 8i9v:CI, 8i9w:CI, 8i9x:CI, 8i9y:CI, 8i9z:CI, 8ia0:CI, 8pv3:CI, 8pv4:CI, 8pv7:CI, 8pvk:CI
42 8esq:o 137 67 0.1684 0.1168 0.2388 1.6 8esr:o, 8etg:o, 8eth:o, 8eti:o, 8eup:o, 8euy:o, 8ev3:o
43 8ch6:V 285 84 0.2316 0.0772 0.2619 2.2 7qtt:V
44 3ex7:C 392 53 0.1474 0.0357 0.2642 3.2 8c6j:7, 3ex7:H, 9fmd:7, 2hyi:C, 2hyi:I, 8i0w:u, 6icz:u, 2j0q:A, 2j0q:B, 2j0s:A, 2j0u:A, 6qdv:7, 2xb2:A, 2xb2:X, 5xjc:u, 5yzg:u, 7znj:A, 7znj:a, 7znj:F, 7znj:f, 7znj:K, 7znj:k
45 9b4e:A 389 33 0.1158 0.0283 0.3333 3.6 9b4e:B, 9b4g:A, 9b4g:B
46 3zxk:A 530 32 0.1158 0.0208 0.3438 4.0 3zxk:B
47 3cei:A 213 29 0.1368 0.0610 0.4483 4.2 3cei:B
48 1gud:A 288 18 0.1158 0.0382 0.6111 5.8 1rpj:A, 8wl7:A, 8wl9:A, 8wlb:A
49 8i0s:Y 320 85 0.2211 0.0656 0.2471 6.0 8i0t:Y, 8i0u:Y, 8i0v:Y
50 4dtf:A 356 54 0.1789 0.0478 0.3148 7.6 4dth:A, 4dtl:A, 4e1c:A, 4e1d:A, 4e1f:A, 4gqk:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218