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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM
RIQYAKTDSDIIA

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pkd:B 240 90 0.9462 0.3667 0.9778 7.50e-60 1aud:A, 7b0y:c, 3bo2:A, 3bo3:A, 3bo4:A, 4c4w:A, 4c4w:E, 3cul:A, 3cul:B, 3cun:A, 3cun:B, 7d7v:C, 5ddo:G, 5ddo:C, 5ddp:D, 5ddp:C, 5ddq:D, 5ddq:C, 5ddr:D, 5ddr:C, 7dlz:A, 7dlz:B, 1drz:A, 7dwh:A, 7dwh:B, 1dz5:A, 1dz5:B, 3egz:A, 5fj4:A, 5fj4:E, 3g8s:A, 3g8s:B, 3g8s:C, 3g8s:D, 3g8t:A, 3g8t:B, 3g8t:C, 3g8t:D, 3g96:A, 3g96:B, 3g96:C, 3g96:D, 3g9c:A, 3g9c:B, 3g9c:C, 3g9c:D, 8gxb:C, 8gxb:D, 8gxb:F, 8gxc:C, 8gxc:D, 8gxc:F, 3hhn:B, 3hhn:D, 3iin:A, 3irw:P, 3iwn:C, 3iwn:D, 8jy0:A, 8jy0:C, 8jy0:E, 3k0j:A, 3k0j:B, 3l3c:A, 3l3c:B, 3l3c:C, 3l3c:D, 6las:E, 6las:D, 6las:C, 6lau:E, 6lau:D, 6lau:C, 6lax:D, 6lax:E, 6lax:C, 6laz:D, 6laz:E, 6laz:C, 1m5k:C, 1m5k:F, 1m5o:C, 1m5o:F, 1m5p:C, 1m5p:F, 1m5v:C, 1m5v:F, 3mum:P, 3mur:P, 3mut:P, 3muv:P, 3mxh:P, 2nz4:A, 2nz4:B, 2nz4:C, 2nz4:D, 2oih:A, 2oj3:A, 3p49:B, 4pr6:A, 4prf:A, 7qr3:A, 7qr3:B, 7qr4:A, 6qx9:1A, 3r1h:A, 3r1h:D, 3r1l:A, 3r1l:D, 1sj3:P, 1sj4:P, 1sjf:A, 6sqn:A, 6sqn:B, 6sqn:C, 6sqq:AAA, 6sqq:BBB, 6sqq:CCC, 1u6b:A, 3ucu:P, 3ucz:P, 3ud3:P, 3ud4:P, 1urn:A, 1urn:B, 1urn:C, 1vbx:A, 1vby:A, 1vbz:A, 1vc0:A, 1vc5:A, 1vc6:A, 7vpx:M, 4w90:B, 4w92:B, 1zzn:A
2 6xh2:A 93 91 0.8817 0.8817 0.9011 2.18e-56 6cmn:A, 3k0j:D, 3k0j:C, 6xh0:A, 6xh1:A, 6xh3:A
3 7abg:B 169 89 0.7097 0.3905 0.7416 4.57e-48 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
4 7abg:B 169 83 0.2796 0.1538 0.3133 0.65 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
5 6f4h:C 96 91 0.7634 0.7396 0.7802 3.37e-43 6f4g:B, 6f4g:E, 6f4h:A, 6f4h:E
6 8ro1:p 76 76 0.5699 0.6974 0.6974 1.15e-38
7 3jb9:k 89 84 0.4086 0.4270 0.4524 4.42e-24
8 7b9v:Y 88 89 0.3011 0.3182 0.3146 1.16e-14 6bk8:r, 7dco:p, 6exn:Y, 6g90:Y, 5gmk:a, 6j6g:a, 6j6h:a, 6j6n:a, 6j6q:a, 5lj3:Y, 5lj5:Y, 5mq0:Y, 5nrl:Y, 7oqb:Y, 7oqe:Y, 5wsg:X, 5y88:p, 5ylz:p, 5zwm:p, 5zwo:p
9 3lqv:B 115 67 0.2473 0.2000 0.3433 2.77e-08 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
10 2mb0:B 95 88 0.2903 0.2842 0.3068 4.80e-08
11 2fy1:A 108 82 0.2796 0.2407 0.3171 7.53e-08
12 7q33:A 93 86 0.2473 0.2473 0.2674 1.18e-06 6pai:D, 6q0r:D, 6q0v:D, 6q0w:D, 6sj7:C, 6ud7:C, 6ue5:C
13 2leb:A 101 88 0.2366 0.2178 0.2500 4.98e-06 2lec:A
14 7zew:A 117 80 0.2903 0.2308 0.3375 9.13e-06 7zex:A
15 5mqf:o 223 85 0.3011 0.1256 0.3294 2.83e-05 6id1:y, 7w59:y, 7w5a:y, 7w5b:y
16 7qde:B 169 65 0.2151 0.1183 0.3077 9.81e-05 7qdd:B
17 8y6o:W 167 71 0.2473 0.1377 0.3239 1.78e-04
18 2mkc:A 118 86 0.2258 0.1780 0.2442 2.69e-04 2my3:A
19 7dco:X 128 86 0.2258 0.1641 0.2442 3.52e-04 5gm6:V, 5zwm:X
20 8xxm:3G 84 83 0.2366 0.2619 0.2651 3.53e-04 5k0y:O, 8pj1:o, 8pj2:o, 8pj3:o, 8pj4:o, 8pj5:o, 8pj6:o
21 4ed5:B 169 66 0.2366 0.1302 0.3333 4.00e-04 4ed5:A
22 5ith:A 80 83 0.2581 0.3000 0.2892 5.35e-04 5o3j:A
23 2rra:A 99 66 0.2043 0.1919 0.2879 6.71e-04 2kxn:B
24 4f02:A 175 83 0.2796 0.1486 0.3133 7.92e-04 1cvj:A, 1cvj:B, 1cvj:C, 1cvj:D, 1cvj:E, 1cvj:F, 1cvj:G, 1cvj:H, 4f02:D
25 2n7c:A 89 74 0.1828 0.1910 0.2297 0.001
26 8h6e:4R 106 77 0.2473 0.2170 0.2987 0.002 8h6j:4R, 8qp8:R, 8qp9:R, 8qpk:R, 6qw6:R, 6qx9:R, 8qxd:R, 8r08:R, 8r0a:R
27 7s7b:C 79 80 0.2151 0.2532 0.2500 0.002 7s7b:G, 7s7c:C
28 6dg0:B 84 82 0.2688 0.2976 0.3049 0.003 6dg0:A
29 7csz:A 175 68 0.2688 0.1429 0.3676 0.004
30 8i0v:4 161 80 0.2473 0.1429 0.2875 0.004
31 8i0v:4 161 86 0.2258 0.1304 0.2442 0.011
32 6g90:B 193 71 0.2366 0.1140 0.3099 0.005
33 6n7p:A 186 73 0.2366 0.1183 0.3014 0.009 6n7r:A, 6n7x:A, 7oqc:B, 7oqe:B, 8w2o:A, 5zwn:Q
34 4lmz:A 176 64 0.2043 0.1080 0.2969 0.014 3nmr:A, 3nna:A, 3nnc:A, 3nnh:A, 3nnh:C, 3nnh:B, 3nnh:D
35 2yka:A 124 84 0.2258 0.1694 0.2500 0.014
36 8pj1:1 588 53 0.1720 0.0272 0.3019 0.016 6fec:w, 2krb:A, 8oz0:I, 8pj2:1, 8pj3:1, 8pj5:1, 8pj6:1
37 4a8x:A 88 67 0.2258 0.2386 0.3134 0.018
38 8xxn:3B 536 53 0.1720 0.0299 0.3019 0.019 6zon:B, 6zp4:B, 6zvj:B
39 2mgz:B 105 46 0.1828 0.1619 0.3696 0.022 4ch1:A, 4cio:A, 2ru3:A
40 1fje:B 175 81 0.2688 0.1429 0.3086 0.036 1rkj:A
41 4qqb:A 169 77 0.2043 0.1124 0.2468 0.063 1b7f:A, 1b7f:B, 4qqb:B
42 2adb:A 127 64 0.2258 0.1654 0.3281 0.066 3zzy:A, 3zzy:B, 3zzz:A, 3zzz:B
43 4bs2:A 174 50 0.1398 0.0747 0.2600 0.13 4iuf:A, 4y00:A, 4y00:B, 4y00:C, 4y00:D, 4y0f:A, 4y0f:B
44 6g90:A 99 52 0.1828 0.1717 0.3269 0.14
45 2mxy:A 105 66 0.2258 0.2000 0.3182 0.19 2mz1:A
46 8pv1:CI 152 68 0.2258 0.1382 0.3088 0.26 8i9p:CI, 8i9r:CI, 8i9t:CI, 8i9v:CI, 8i9w:CI, 8i9x:CI, 8i9y:CI, 8i9z:CI, 8ia0:CI, 8pv3:CI, 8pv4:CI, 8pv7:CI, 8pvk:CI
47 2n82:B 104 46 0.1505 0.1346 0.3043 0.33 2err:A, 7vrl:B
48 8esq:o 137 67 0.1828 0.1241 0.2537 0.45 8esr:o, 8etg:o, 8eth:o, 8eti:o, 8eup:o, 8euy:o, 8ev3:o
49 7evo:D 200 81 0.2151 0.1000 0.2469 0.94 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A
50 8i0s:Y 320 85 0.2366 0.0688 0.2588 1.4 8i0t:Y, 8i0u:Y, 8i0v:Y
51 3s1s:A 870 52 0.1613 0.0172 0.2885 1.8
52 3d34:B 215 27 0.1075 0.0465 0.3704 2.3 3d34:A
53 3zxk:A 530 32 0.1183 0.0208 0.3438 2.9 3zxk:B
54 8ch6:V 285 83 0.2366 0.0772 0.2651 3.1 7qtt:V
55 4dtf:A 356 54 0.1828 0.0478 0.3148 4.1 4dth:A, 4dtl:A, 4e1c:A, 4e1d:A, 4e1f:A, 4gqk:A
56 3cei:A 213 29 0.1398 0.0610 0.4483 4.2 3cei:B
57 6n7r:C 133 54 0.1720 0.1203 0.2963 4.7 6n7p:C, 6n7x:C, 7oqc:A, 7oqe:A, 8w2o:C, 5zwn:S
58 3ex7:C 392 52 0.1505 0.0357 0.2692 4.8 8c6j:7, 3ex7:H, 9fmd:7, 2hyi:C, 2hyi:I, 8i0w:u, 6icz:u, 2j0q:A, 2j0q:B, 2j0s:A, 2j0u:A, 6qdv:7, 2xb2:A, 2xb2:X, 5xjc:u, 5yzg:u, 7znj:A, 7znj:a, 7znj:F, 7znj:f, 7znj:K, 7znj:k
59 1gud:A 288 18 0.1183 0.0382 0.6111 5.2 1rpj:A, 8wl7:A, 8wl9:A, 8wlb:A
60 6gsn:p 658 52 0.1505 0.0213 0.2692 5.3 8cah:p, 8cas:p, 6fyx:p, 6fyy:p, 6gsm:p, 6zce:p, 6zu9:p
61 2o0r:A 385 45 0.1398 0.0338 0.2889 9.6 2o0r:B
62 8ch6:U 295 65 0.1935 0.0610 0.2769 10.0 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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