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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPNIDKQSFLSTKLI
SLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIFTIPVFPQEPVD
INTESSSDAEVVNMDQEMGTSIKISKIAANDAGALAFTIEAPYEDALYPMTVSFQESTRDKLAKSFTGMAIQSVVMANDH
DQELPYDVITSLKSDEYLVQ

The query sequence (length=260) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fjw:A 263 262 1.0000 0.9886 0.9924 0.0 5fjw:B, 5fjw:F, 5fjw:C, 5fjw:D, 5fjw:G, 5fjw:E, 5fjw:H, 5fjx:B, 5fjx:A, 5fjz:A, 5fjz:C, 5fjz:B, 5fjz:D, 5fk0:B
2 8oz5:A 514 68 0.0885 0.0447 0.3382 1.5 8oz5:B, 8oz5:C, 8oz5:D, 8oz5:E, 8oz5:F, 8p02:A, 8p02:B, 8p02:C, 8p02:D, 8p02:E, 8p02:F, 8pmk:A, 8pmk:B, 8pmk:C, 8pmk:D, 8pmk:E, 8pmk:F
3 7rqs:A 1074 51 0.0654 0.0158 0.3333 1.9 7roz:A
4 7eu1:M 1055 51 0.0654 0.0161 0.3333 2.0
5 7eu0:M 1052 51 0.0654 0.0162 0.3333 2.1
6 8con:A 379 57 0.0731 0.0501 0.3333 2.1 4rqt:A, 4rqu:A, 4rqu:B
7 7zwc:c 303 72 0.0769 0.0660 0.2778 5.4 7zwd:c, 7zx7:c, 7zx8:c, 7zxe:c
8 5owu:A 860 61 0.0654 0.0198 0.2787 6.5
9 4lmg:B 121 39 0.0615 0.1322 0.4103 9.1 4lmg:A, 4lmg:C, 4lmg:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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