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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VPANAVTESDPAAVALKYHRDAASSERVAAARPGLPPEEQHCENCQFMNPDSAAADWKGCQLFPGKLINLSGWCASWTLR

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3hip:A 82 80 1.0000 0.9756 1.0000 4.82e-56 3hip:B, 3hip:C
2 1js2:A 89 81 0.7375 0.6629 0.7284 8.36e-40 3a38:A, 3a39:A, 6aiq:A, 6air:A, 2ams:A, 1b0y:A, 7c52:b, 1cku:A, 1cku:B, 5d8v:A, 1eyt:A, 2fla:A, 1hip:A, 1hrq:A, 1hrr:A, 1iua:A, 1js2:B, 1js2:C, 1js2:D, 1neh:A, 1noe:A, 7vos:A, 5wqq:A, 5wqr:A
3 1hpi:A 71 75 0.4000 0.4507 0.4267 1.87e-14
4 1hlq:A 75 75 0.2500 0.2667 0.2667 5.26e-04 1hlq:B, 1hlq:C
5 3h31:A 74 45 0.2000 0.2162 0.3556 0.004
6 4eb5:C 138 30 0.1875 0.1087 0.5000 0.41 4eb5:D, 4eb7:C
7 6rft:A 406 52 0.2125 0.0419 0.3269 0.46 6rft:B, 6rft:C, 6rft:D, 6rft:E, 6rft:F, 6rfx:D, 6rfx:A, 6rfx:B, 6rfx:C, 6rfx:E
8 6z1p:Av 206 33 0.1625 0.0631 0.3939 2.7
9 3w5m:A 1030 50 0.1625 0.0126 0.2600 2.9 3w5n:A
10 8oz0:J 687 65 0.2250 0.0262 0.2769 3.5 8pj2:y, 8pj3:y, 7qp7:y
11 8pj1:y 731 65 0.2250 0.0246 0.2769 3.5 6fec:2, 8pj4:y, 8pj5:y, 8pj6:y, 8ppl:Iy, 7qp6:y, 8rg0:y, 6w2s:2, 6w2t:2, 6ybw:y, 6zmw:y
12 6blk:C 158 37 0.1625 0.0823 0.3514 4.6 6blk:D, 6blk:A, 6blk:B
13 3pps:A 564 33 0.1375 0.0195 0.3333 4.8 3pps:B, 3pps:C, 3pps:D
14 3dha:A 254 13 0.1125 0.0354 0.6923 5.0 2a7m:A, 2br6:A, 2btn:A, 3dhb:A, 3dhc:A, 5eh9:A, 5eht:A, 4j5f:A, 4j5h:A, 7l5f:A
15 5e1r:C 358 30 0.1375 0.0307 0.3667 9.9 5e1r:A, 5e1r:B, 5e1r:D, 5e1r:E, 5e1r:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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