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BioLiP
>protein
VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHDTEFQHPCFLR
GQEQLLENIKRKV

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dcj:B 110 102 1.0000 0.8455 0.9118 1.10e-64 5d5u:B, 5d5v:B, 5d5v:D, 7dcj:A, 7dcs:A, 7dcs:B, 7dcs:C, 7dcs:D, 7dcs:E, 7dcs:F, 7dct:A, 7dct:B, 7dct:C, 7dct:D, 7dct:E, 7dct:F, 5hdn:A, 5hdn:C
2 7dcu:A 101 94 0.7204 0.6634 0.7128 8.61e-44 7dci:A, 7dcu:C
3 5d8k:B 106 105 0.7204 0.6321 0.6381 9.27e-43 5d8l:B, 5d8l:D, 5d8l:F, 5d8l:H, 7dcu:B
4 5d5x:B 99 97 0.4624 0.4343 0.4433 2.95e-24 5d5w:B, 5d5x:E
5 1fyk:A 88 66 0.4194 0.4432 0.5909 1.58e-23 3hts:B
6 8pqw:A 2892 38 0.1505 0.0048 0.3684 1.5 8pqy:A, 8pqz:A, 8pqz:J
7 5nug:A 2920 38 0.1505 0.0048 0.3684 1.6 5nug:B
8 8ptk:f 4502 38 0.1505 0.0031 0.3684 1.8 8ptk:e
9 4bqa:A 132 65 0.1828 0.1288 0.2615 2.1
10 7yni:A 566 31 0.1183 0.0194 0.3548 2.5
11 7sla:A 585 31 0.1183 0.0188 0.3548 2.5 7sl8:A
12 7wmv:A 602 31 0.1183 0.0183 0.3548 2.5
13 7oya:a1 147 46 0.1720 0.1088 0.3478 6.1 7oyb:a1
14 8y9c:B 1609 23 0.0968 0.0056 0.3913 6.1
15 6oq5:A 2346 23 0.0968 0.0038 0.3913 6.3 6oq7:A, 7s0z:B, 7s0z:A
16 8b9z:E 214 18 0.0860 0.0374 0.4444 7.5 8ba0:E, 8esw:V2, 8esz:V2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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