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BioLiP
>protein
VNLYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFRE
AIILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQD
QADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKKYGWREH

The query sequence (length=230) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3fir:A 231 230 0.9957 0.9913 0.9957 6.34e-169 3fir:B, 3fj7:A, 3fj7:B, 3fjm:A, 3fjm:B, 2hxw:A, 2hxw:B
2 1twy:A 249 140 0.1565 0.1446 0.2571 0.034
3 5oj7:A 286 93 0.1000 0.0804 0.2473 0.95 5ojn:A
4 8j4h:A 309 70 0.0913 0.0680 0.3000 2.1 8j4j:A
5 5um2:A 316 174 0.1609 0.1171 0.2126 2.5
6 6o77:A 872 105 0.0957 0.0252 0.2095 2.7 9b6i:A, 9b6i:B, 9b6i:C, 9b6i:D, 6o77:D, 6o77:B, 6o77:C
7 1rmg:A 422 52 0.0739 0.0403 0.3269 2.8
8 3aiq:A 491 132 0.1522 0.0713 0.2652 3.0 3air:A, 3ais:A, 3aiv:A, 3aiw:A
9 6co7:A 1061 55 0.0696 0.0151 0.2909 3.5 6co7:B, 6co7:C, 6co7:D
10 3l8e:A 185 36 0.0522 0.0649 0.3333 3.5 3esq:A, 3esr:A, 2gmw:A, 2gmw:B, 3l1u:A, 3l1u:B, 3l1v:A, 3l1v:B, 3l8e:B, 3l8f:A, 3l8g:A
11 6o72:A 858 105 0.0957 0.0256 0.2095 4.0 6o72:B, 6o72:C, 6o72:D
12 3qp5:A 251 67 0.0783 0.0717 0.2687 4.1 3qp1:A, 3qp2:A, 3qp4:A, 3qp5:B, 3qp5:C, 3qp5:D
13 4hw8:A 376 66 0.1000 0.0612 0.3485 4.5 4hw8:B
14 3qp6:A 258 67 0.0739 0.0659 0.2537 5.1 3qp8:A, 3qp8:B, 3qp8:C, 3qp8:D
15 1uu4:A 224 90 0.1130 0.1161 0.2889 5.4 1uu5:A, 1uu6:A, 1w2u:A
16 5ysd:B 389 67 0.0826 0.0488 0.2836 6.0 5ysb:A, 5ysb:B, 5ysd:A, 5yse:A, 5yse:B, 5ysf:A, 5ysf:B
17 3c9h:B 339 57 0.0652 0.0442 0.2632 6.7 3c9h:A
18 1sbp:A 309 173 0.1652 0.1230 0.2197 8.5
19 6nr2:A 859 62 0.0565 0.0151 0.2097 8.5 6nr2:B, 6nr2:C, 6nr2:D, 6nr3:A, 6nr3:B, 6nr3:C, 6nr3:D, 6o6a:A, 6o6a:B, 6o6a:C, 6o6a:D, 6o6r:A, 6o6r:B, 6o6r:C, 6o6r:D
20 7lu4:B 977 67 0.0783 0.0184 0.2687 8.5
21 2q88:A 257 83 0.0957 0.0856 0.2651 9.1 2q89:A
22 7tav:B 229 25 0.0391 0.0393 0.3600 9.7 7tav:C, 7tav:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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