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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VNLRTQKRLAASVLGCGEGKVWLDPNEVSEISNANSRQSIRKLVADGLIIKKPVTMHSRSMPQQVLWMRRQRVLRRLLVK
YRASGKIDKHLYHELYHLAKGNTFKHKRALVEHIHRAKA

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8i9z:LR 148 119 1.0000 0.8041 1.0000 4.22e-86 8i9x:LR, 8i9y:LR, 8ia0:LR
2 7r81:T1 191 146 0.9412 0.5864 0.7671 1.04e-65 7olc:LR, 7old:LR, 8onz:LR, 8oo0:LR, 8pv1:LR, 8pv2:LR, 8pv3:LR, 8pv4:LR, 8pv5:LR, 8pv6:LR, 8pv7:LR, 8pv8:LR, 8pvk:LR, 8pvl:LR, 7z3n:LR, 7z3o:LR
3 4v6w:CR 203 145 0.6975 0.4089 0.5724 2.25e-52 6xu6:CR, 6xu7:CR, 6xu8:CR
4 8etc:R 124 123 0.7731 0.7419 0.7480 6.70e-52 8esq:R, 8esr:R
5 7nac:R 134 118 0.7227 0.6418 0.7288 7.36e-52 6elz:R, 6em5:R, 7nad:R, 7naf:R, 7ohr:R, 7r72:R, 7r7a:R, 8v87:R
6 8c3a:z 179 146 0.7563 0.5028 0.6164 5.26e-50 8c3a:BM, 8cq7:z, 8cq7:BM, 8cqw:z, 8cqw:BM, 8cre:z, 8cre:BM, 8oeq:z, 8oeq:BM, 7pzy:z, 7q08:z, 7q0f:z, 7q0p:z, 7q0r:z, 8q5i:z
7 8eui:R 149 146 0.7899 0.6309 0.6438 1.77e-49 8etg:R, 8etj:R, 8eug:R
8 4v6i:BT 189 146 0.7311 0.4603 0.5959 2.42e-46 8aaf:E, 8agt:E, 8agu:E, 8agv:E, 8agw:E, 8agx:E, 8agz:E, 5apn:R, 5apo:R, 7azy:H, 7b7d:Ln, 8bip:LR, 8bjq:LR, 8bn3:M9, 8bqd:BF, 8bqx:BF, 7bt6:R, 7btb:R, 8ccs:D, 8cdl:D, 8cdr:D, 8ceh:D, 8cf5:D, 8cg8:D, 8cgn:D, 8civ:D, 8cku:D, 8cmj:D, 5dat:M9, 5dat:m9, 5dc3:M9, 5dc3:m9, 5dge:M9, 5dge:m9, 5dgf:M9, 5dgf:m9, 5dgv:M9, 5dgv:m9, 8eub:AR, 8evp:AR, 8evq:AR, 8evr:AR, 8evs:AR, 8evt:AR, 8ewb:AR, 8ewc:AR, 5fci:M9, 5fci:m9, 5fcj:M9, 5fcj:m9, 6ft6:R, 5gak:T, 6gq1:R, 6gqb:R, 6gqv:R, 5h4p:R, 6hd7:T, 8hfr:RP, 6hhq:z, 6hhq:CT, 5i4l:M9, 5i4l:m9, 6i7o:BF, 6i7o:YF, 3j6x:59, 3j6y:59, 3j77:69, 3j78:69, 3jct:R, 5jcs:R, 5juo:W, 5jup:W, 5jus:W, 5jut:W, 5juu:W, 8k2d:LR, 8k82:LR, 5lyb:M9, 5lyb:m9, 5m1j:R5, 6m62:R, 5mc6:BF, 5mei:z, 5mei:CT, 7mpi:AR, 7mpj:AR, 6n8j:R, 6n8k:R, 6n8l:R, 6n8m:e, 6n8n:e, 6n8o:e, 7n8b:AR, 5ndg:M9, 5ndg:m9, 5ndv:M9, 5ndv:m9, 5ndw:M9, 5ndw:m9, 7nrc:LT, 7nrd:LT, 5obm:M9, 5obm:m9, 7of1:R, 7oh3:R, 7ohq:R, 6oig:R, 5on6:z, 5on6:CT, 7osa:eL19, 7osm:eL19, 8p8m:QQ, 8p8n:QQ, 8p8u:QQ, 8pfr:QQ, 6q8y:BF, 6qik:R, 6qt0:R, 6qtz:R, 6r84:T, 6r86:T, 6r87:T, 6ri5:R, 7rr5:LR, 6rzz:R, 6s05:R, 6s47:AT, 6snt:x, 6sv4:BF, 6sv4:YF, 6sv4:ZF, 6t4q:LR, 5t62:e, 5t6r:e, 6t7i:LR, 6t7t:LR, 6t83:Ry, 6t83:C, 5tbw:z, 5tbw:CT, 6tb3:BF, 5tga:M9, 5tga:m9, 5tgm:M9, 5tgm:m9, 6tnu:BF, 7too:AL19, 7top:AL19, 7u0h:R, 4u3m:M9, 4u3m:m9, 4u3n:M9, 4u3n:m9, 4u3u:M9, 4u3u:m9, 4u4n:M9, 4u4n:m9, 4u4o:M9, 4u4o:m9, 4u4q:M9, 4u4q:m9, 4u4r:M9, 4u4r:m9, 4u4u:M9, 4u4u:m9, 4u4y:M9, 4u4y:m9, 4u4z:M9, 4u4z:m9, 4u50:M9, 4u50:m9, 4u51:M9, 4u51:m9, 4u52:M9, 4u52:m9, 4u53:M9, 4u53:m9, 4u55:M9, 4u55:m9, 4u56:M9, 4u56:m9, 4u6f:M9, 4u6f:m9, 7ug6:R, 7uoo:R, 7uqb:R, 7uqz:R, 7v08:R, 4v4b:BP, 4v7f:R, 4v7r:BS, 4v7r:DS, 4v88:BR, 4v88:DR, 4v8t:R, 4v8y:BR, 4v8z:BR, 4v91:R, 6woo:R, 2ww9:J, 2wwa:J, 2wwb:J, 6xiq:R, 6xir:R, 8y0u:LR, 6ylg:R, 6ylh:R, 6ylx:R, 6yly:R, 7z34:R, 6z6j:LR, 6z6k:LR, 7zpq:BQ, 7zrs:BQ, 7zs5:BS, 7zuw:BQ, 7zux:EQ, 7zw0:LU
9 5it7:RR 188 146 0.7059 0.4468 0.5753 3.71e-46 6uz7:AR
10 4v7h:BP 176 141 0.7059 0.4773 0.5957 9.13e-45
11 6zj3:Lf 170 142 0.5966 0.4176 0.5000 9.81e-45
12 8azw:H 182 146 0.6975 0.4560 0.5685 9.55e-44 8b2l:H3, 7qiw:T, 7qix:X, 7qiz:T
13 9bh5:CR 194 145 0.6807 0.4175 0.5586 1.04e-43 9cai:CR
14 4v3p:LT 189 146 0.6891 0.4339 0.5616 4.01e-43 8ip8:LA, 8ipa:LA, 8ipb:LA, 8jiv:CR, 4v7e:CR
15 4v6x:CR 189 144 0.6891 0.4339 0.5694 9.59e-43 7a01:32, 8a3d:L, 5aj0:AR, 8b5l:R, 8b6c:R, 9bdl:AL19, 9bdn:AL19, 9bdp:AL19, 8bf9:R, 7bhp:LR, 8bhf:E1, 8bpo:Q2, 8btk:BR, 7cpu:LR, 7cpv:LR, 4d5y:R, 4d67:R, 6d90:R, 6d9j:R, 9f1b:BR, 9f1c:BR, 9f1d:BR, 7f5s:LR, 8fl2:LD, 8fl3:LD, 8fl4:LD, 8fl6:LD, 8fl7:LD, 8fl9:LD, 8fla:LD, 8flb:LD, 8flc:LD, 8fld:LD, 8fle:LD, 8flf:LD, 9fpz:LR, 9fq0:LR, 6frk:R, 6ftg:R, 6fti:R, 6ftj:R, 8g5y:LR, 8g5z:LR, 8g60:LR, 8g61:LR, 8g6j:LR, 8glp:LR, 6gz3:AR, 6gz4:AR, 6gz5:AR, 6hcf:R3, 6hcj:R3, 6hcm:R3, 6hcq:R3, 8idt:a, 8idy:a, 8ie3:a, 8ifd:2L, 8ife:2L, 8ine:a, 8inf:a, 8ink:a, 6ip5:2L, 6ip6:2L, 6ip8:2L, 8ipd:a, 8ipx:a, 8ipy:a, 8ir1:a, 8ir3:a, 3j7o:R, 3j7p:R, 3j7q:R, 3j7r:R, 3j92:R, 3jag:R, 3jah:R, 3jai:R, 3jaj:R, 3jan:R, 8jdj:W, 8jdk:W, 8jdl:W, 8jdm:W, 8k2c:LR, 5lks:LR, 6lqm:a, 6lsr:a, 6lss:a, 7ls1:L2, 7ls2:L2, 6lu8:a, 5lzs:R, 5lzt:R, 5lzu:R, 5lzv:R, 5lzw:R, 5lzx:R, 5lzy:R, 5lzz:R, 7mdz:R, 6mtb:R, 6mtc:R, 6mtd:R, 6mte:R, 7nfx:R, 7nwg:R3, 7nwh:R, 7nwi:R, 7o7y:BR, 7o7z:BR, 7o80:BR, 7o81:BR, 7obr:R, 8ohd:LR, 8oj0:LR, 8oj5:LR, 8oj8:LR, 6ole:S, 6olf:S, 6olg:AR, 6oli:S, 6olz:AR, 6om0:S, 6om7:S, 8ony:LR, 7oya:R1, 7oyb:R1, 7oyc:R1, 7oyd:R, 8p2k:BR, 6p5i:AR, 6p5j:AR, 6p5k:AR, 6p5n:AR, 8q7z:BR, 8q87:BR, 8qfd:R, 7qgg:S, 8qoi:LR, 7qvp:LR, 7qvp:MR, 7qwq:R, 7qwr:R, 7qws:R, 6qzp:LR, 6r5q:R, 6r6g:R, 6r6p:R, 6r7q:R, 8rjb:R, 8rjc:R, 8rjd:R, 8scb:R, 6sgc:R2, 6swa:o, 6sxo:LR, 5t2c:L, 6t59:R3, 7tm3:R, 7toq:AL19, 7tor:AL19, 7tut:R, 7ucj:R, 7uck:R, 4ug0:LR, 4ujc:BR, 4ujd:AR, 4uje:CR, 6xa1:LR, 7xnx:LR, 7xny:LR, 8xsx:LR, 8xsy:LR, 8xsz:LR, 6y0g:LR, 8y0w:LR, 8y0x:LR, 6y2l:LR, 6y57:LR, 6y6x:LR, 8yoo:LR, 8yop:LR, 6z6l:LR, 6z6m:LR, 6z6n:LR, 7zjw:LU, 7zjx:LU, 6zm7:LR, 6zme:LR, 6zmi:LR, 6zmo:LR, 6zvk:32
16 8rxh:LQ 201 145 0.6471 0.3831 0.5310 4.83e-42 8a3w:Q, 8a98:Q, 6az3:Q, 3jcs:Q, 8ovj:Q, 8rxx:LQ, 5t2a:R
17 6w6l:S 156 125 0.6639 0.5064 0.6320 5.22e-42 8fky:LD, 8fkz:LD, 7ow7:L
18 4v8m:BT 199 145 0.6387 0.3819 0.5241 4.15e-41 8ova:BT, 8ove:BT, 5t5h:T
19 5xxb:Q 176 144 0.6555 0.4432 0.5417 1.17e-37
20 4v8p:BO 184 146 0.6807 0.4402 0.5548 1.24e-37 4v8p:EO, 4v8p:GO
21 4v8p:CO 175 146 0.6807 0.4629 0.5548 2.62e-37
22 5xy3:R 162 145 0.5630 0.4136 0.4621 1.01e-36
23 3j79:T 181 144 0.6134 0.4033 0.5069 5.38e-34 3jbn:AT, 3jbo:AT, 3jbp:AT, 8tpu:AT, 5umd:T
24 4v5z:Bp 159 127 0.5714 0.4277 0.5354 5.07e-31
25 7ohv:R 89 99 0.5378 0.7191 0.6465 9.68e-31
26 8br8:LS 192 141 0.5126 0.3177 0.4326 1.16e-30 8brm:LS, 8bsi:LS, 8bsj:LS, 8btd:LS, 8btr:LS, 8fru:R, 7pwg:R, 7pwo:R2
27 6skf:BS 146 135 0.4118 0.3356 0.3630 4.41e-26 6skg:BS, 6th6:BS
28 6zu5:LR0 161 143 0.3613 0.2671 0.3007 8.40e-23
29 4v4n:AQ 150 136 0.3782 0.3000 0.3309 1.89e-22 4v6u:BQ
30 7qep:M9 170 140 0.3782 0.2647 0.3214 8.26e-21
31 6rm3:LR0 165 138 0.3613 0.2606 0.3116 9.12e-20
32 8p5d:LR0 164 135 0.3866 0.2805 0.3407 8.36e-18 8p60:LR0, 8p60:KR0, 7qca:LR0
33 4v9f:P 144 142 0.3277 0.2708 0.2746 1.22e-11 3cc2:P, 3cc4:P, 3cc7:P, 3cce:P, 3ccj:P, 3ccl:P, 3ccm:P, 3ccq:P, 3ccr:P, 3ccs:P, 3ccu:P, 3ccv:P, 3cd6:P, 3cma:P, 3cme:P, 3cpw:O, 3cxc:O, 1ffk:M, 3g4s:P, 3g6e:P, 3g71:P, 3i55:P, 3i56:P, 1jj2:O, 1k73:Q, 1k8a:Q, 1k9m:Q, 1kc8:Q, 1kd1:Q, 1kqs:O, 1m1k:Q, 1m90:Q, 1n8r:Q, 1nji:Q, 2otj:P, 2otl:P, 3ow2:O, 1q7y:Q, 1q81:Q, 1q82:Q, 1q86:Q, 2qa4:P, 2qex:P, 1qvf:O, 1qvg:O, 1s72:P, 1vq4:P, 1vq5:P, 1vq6:P, 1vq7:P, 1vq8:P, 1vq9:P, 1vqk:P, 1vql:P, 1vqm:P, 1vqn:P, 1vqo:P, 1vqp:P, 1w2b:O, 1yhq:P, 1yi2:P, 1yij:P, 1yit:P, 1yj9:P, 1yjn:P, 1yjw:P
34 8hku:L19E 144 129 0.3025 0.2500 0.2791 1.33e-09 8hkv:L19E, 8hky:L19E, 8hkz:L19E, 8hl1:L19E, 8hl2:L19E, 8hl3:L19E, 8hl4:L19E, 8hl5:L19E
35 5zr6:A 214 49 0.1345 0.0748 0.3265 0.94 5zr6:B
36 5ckw:B 400 69 0.1597 0.0475 0.2754 3.5 5ckw:A
37 3n29:A 371 84 0.1681 0.0539 0.2381 6.8 3n29:B
38 8jhq:A 446 72 0.1765 0.0471 0.2917 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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