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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VNIKTNPFKAVSFVESAIKKALDNAGYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRLLNDDR
CFYKDGFMLDGELMVKGVDFNTGSGLLRTKWTDTKNQEFHRKKDKVPFKLHTGHLHIKLYAILPLHIVESGEDCDVMTLL
MQEHVKNMLPLLQEYFPEIEWQAAESYEVYDMVELQQLYEQKRAEGHEGLIVKDPMCIYKRGKKSGWWKMKPENEADGII
QGLVWGTKGLANEGKVIGFEVLLESGRLVNATNISRALMDEFTETVKEATLSQWGFFDACTINPYDGWACQISYMEETPD
GSLRHPSFVMFR

The query sequence (length=332) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1a0i:A 332 332 1.0000 1.0000 1.0000 0.0
2 6wbo:A 555 343 0.2620 0.1568 0.2536 1.58e-04
3 6bkf:A 562 49 0.0663 0.0391 0.4490 5.40e-04
4 3gde:A 551 341 0.2470 0.1488 0.2405 0.006
5 7lsy:Y 855 46 0.0633 0.0246 0.4565 0.006 6bkg:A, 4htp:A, 4htp:B, 3w1b:A, 3w1g:A, 3w5o:A, 3w5o:B
6 2cfm:A 561 166 0.1386 0.0820 0.2771 0.009
7 6ras:I 433 206 0.1536 0.1178 0.2476 0.009 6rar:I, 6rau:I, 6rce:I
8 4eq5:A 516 232 0.1928 0.1240 0.2759 0.20
9 3ivd:A 499 49 0.0452 0.0301 0.3061 0.83 3ivd:B, 3ive:A
10 3l2p:A 535 68 0.0602 0.0374 0.2941 2.1
11 6gdr:A 256 74 0.0542 0.0703 0.2432 3.8
12 6u1x:A 2059 44 0.0422 0.0068 0.3182 4.0
13 5oiu:C 386 83 0.0602 0.0518 0.2410 4.0 5it5:F, 5it5:A, 5it5:B, 5it5:E, 5it5:C, 5it5:D, 5oiu:A, 5oiu:B, 5oiu:D, 5oiu:E, 5oiu:F
14 5a22:A 2002 44 0.0422 0.0070 0.3182 4.1
15 4cns:D 479 22 0.0301 0.0209 0.4545 4.8 4cns:A, 4cns:B, 4cns:C
16 2glf:A 450 53 0.0542 0.0400 0.3396 5.1 2glf:B, 2glf:C, 2glf:D
17 3j8g:X 418 129 0.1054 0.0837 0.2713 5.7
18 5hut:A 469 61 0.0452 0.0320 0.2459 6.9 5hut:B, 5huu:A, 5huu:B, 5huv:A, 5huv:B, 5hvl:A, 5hvl:B
19 7uoo:v 293 80 0.0602 0.0683 0.2500 7.3 5a53:C, 7bt6:v, 7btb:v, 6ft6:v, 3jct:v, 6m62:v, 7oh3:v, 7ohq:v, 7oht:v, 7ug6:v, 7uqb:v, 7uqz:v, 7v08:v
20 3f2v:A 174 82 0.0753 0.1437 0.3049 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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