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BioLiP
>protein
VLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8zmy:A 98 62 0.9841 0.6327 1.0000 4.62e-35 8a9l:A, 9ijp:C, 9ijp:L, 7lc9:K, 7lc9:G, 7wmm:A, 7wmm:E, 7wmm:C, 7wmm:D, 7wmm:F, 8x7l:F, 8x7l:H, 8x7l:I, 8x7m:F, 8x7m:H, 8x7m:G, 8x7m:C, 8x7m:D, 8x7m:J, 8x7m:E, 8x7m:A, 8x7m:B, 8x7m:I, 8x7o:A, 8x7o:E, 8x7o:C, 8x7o:D, 8x7o:G, 8x7p:A, 8x7p:B, 8x7p:C, 8x7p:D, 8x7p:E, 8x7q:A, 8x7q:B, 8x7q:E, 8x7q:I, 8x7q:J, 8x7q:C, 8x7q:F, 8x7q:G, 8x7q:H, 8x7r:G, 8x7r:D, 8x7r:F, 8x7r:C, 8x7r:A, 8x7r:J, 8x7r:E, 8x7r:B, 8x7r:H, 8x7r:I, 7yk8:K, 7yk8:L, 7yk8:B, 7ynf:A, 7ynf:B, 7ynf:C, 7ynf:D, 7ynm:A, 7ynm:C, 7ynm:B, 7ynm:D, 7ynm:J, 7ynm:G, 7ynm:I, 7ynm:H, 7ynp:D, 7ynp:F, 8zli:A, 8zli:B, 8zli:E, 8zli:J, 8zli:I, 8zli:C, 8zli:D, 8zli:F, 8zli:L, 8zli:K, 8zlo:A, 8zlo:E, 8zlo:C, 8zlo:F, 8zlo:G, 8zlo:H, 8zlo:O, 8zlo:D, 8zlo:I, 8zlo:J, 8zlo:T, 8zlo:B, 8zmy:B, 8zmy:C, 8zmy:E, 8zmy:F, 8zmy:G, 8zmy:H, 8zmy:I, 8zmy:K, 8zmy:J, 8zmy:D, 8zmy:L
2 7zg5:C 84 51 0.2540 0.1905 0.3137 0.49
3 2x77:A 181 21 0.1429 0.0497 0.4286 4.6 2x77:B
4 4url:A 364 28 0.1429 0.0247 0.3214 6.2 4url:B, 4urn:A, 4urn:B, 4urn:C
5 2oby:A 334 38 0.2381 0.0449 0.3947 6.3 2j8z:A, 2oby:B, 2oby:C, 2oby:D, 2oby:E
6 4ojl:C 759 36 0.1905 0.0158 0.3333 7.3 4ojl:A, 4ojl:B, 4ojo:A, 4ojo:B, 4ojp:A, 4ojp:B, 4ojp:C
7 1pjq:B 455 40 0.2222 0.0308 0.3500 9.9 6p5x:A, 6p5x:B, 6p5z:A, 6p5z:B, 6p7c:A, 6p7c:B, 6p7d:A, 6p7d:B, 1pjs:A, 1pjs:B, 1pjt:A, 1pjt:B, 6pqz:A, 6pqz:B, 6pr0:A, 6pr0:B, 6pr1:A, 6pr1:B, 6pr2:A, 6pr2:B, 6pr3:A, 6pr3:B, 6pr4:A, 6pr4:B, 6ulu:A, 6ulu:B, 6veb:A, 6veb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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