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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VLTAEQVIDKARSYLSDEHIAFVEKAYLYAEDKSGEPYIIHPIQVAGILVDLEMDPSTIAGGFLHDVVEDTDVTLDDLKE
AFSEEVAMLVDGVTKLGKIQEEQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAH
RLGISKIKWELEDTALRYLNPQQYYRIVNLMKKKRAERELYVDEVVNEVKKRVEEVNIKADFSGRPKHIYSIYRKMVLQN
KQFNEIYDLLAVRILVNSIKDCYAVLGIIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIA
EYGVAAHWAYK

The query sequence (length=331) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yxa:A 536 339 0.9909 0.6119 0.9676 0.0 8acu:A, 8acu:B
2 7oiw:A 327 334 0.6465 0.6544 0.6407 2.12e-163 7oiw:B
3 1vj7:A 326 334 0.5921 0.6012 0.5868 1.13e-138 1vj7:B
4 5xnx:D 321 312 0.4743 0.4891 0.5032 3.66e-112 5xnx:C
5 7ohg:A 351 343 0.4864 0.4587 0.4694 5.70e-108 6s2t:A, 6s2u:A, 6s2v:A
6 6s2v:C 336 336 0.4653 0.4583 0.4583 5.04e-100 6s2v:B
7 5iqr:8 615 294 0.3776 0.2033 0.4252 1.99e-81
8 5kpv:33 675 279 0.3625 0.1778 0.4301 1.62e-77 5kps:A, 5kpw:33, 5kpx:33
9 5l3p:z 545 289 0.3686 0.2239 0.4221 2.49e-77
10 7qpr:D 689 305 0.3172 0.1524 0.3443 3.19e-46 7qpr:A, 7qpr:B, 7qpr:C, 7qps:A
11 7qps:B 303 307 0.2991 0.3267 0.3225 8.59e-35
12 3nqw:A 178 109 0.1178 0.2191 0.3578 9.70e-11 3nqw:B
13 3nr1:A 178 118 0.1360 0.2528 0.3814 2.70e-10 3nr1:B, 5vxa:A, 5vxa:B
14 7qoe:A 187 124 0.1178 0.2086 0.3145 2.86e-08
15 7qoc:A 193 105 0.0846 0.1451 0.2667 1.25e-04 7qoc:B, 7qod:A, 7qod:B
16 6ewz:A 202 78 0.0785 0.1287 0.3333 1.34e-04 6ewz:B, 6ex0:A, 6ex0:B, 6fgx:A, 6fgx:B
17 6z3o:AAA 178 135 0.1208 0.2247 0.2963 0.001 6yvc:A, 6yvc:B, 6yvc:C, 6yvc:D, 6z3o:BBB, 6z3o:CCC, 6z3o:DDD
18 7smg:B 144 84 0.0846 0.1944 0.3333 0.004 7smg:A, 7smg:C, 7smg:D
19 5ded:A 196 105 0.0937 0.1582 0.2952 0.11 5ded:D, 5ded:B, 5ded:C, 5ded:E, 5ded:F, 5ded:G, 5ded:H, 5f2v:V, 5f2v:X, 5f2v:T, 5f2v:S, 5f2v:Y, 5f2v:O, 5f2v:Z, 5f2v:W, 5f2v:U, 5f2v:P, 5f2v:R, 5f2v:Q
20 6n8z:B 723 34 0.0453 0.0207 0.4412 1.0 6ahf:F, 5kne:A, 5kne:B, 6n8t:C, 6n8t:D, 6n8t:E, 6n8v:A, 6n8v:B, 6n8v:C, 6n8v:E, 6n8v:F, 6n8z:A, 6n8z:C, 6n8z:D, 6n8z:E, 6n8z:F, 5vjh:A, 5vjh:B, 5vjh:C, 5vjh:D, 5vjh:E, 5vjh:F, 5vy8:A, 5vy8:B, 5vy8:F, 5vy9:C, 5vy9:D, 5vya:A, 5vya:B, 5vya:C, 5vya:D, 5vya:E, 5vya:F
21 5vgr:A 408 50 0.0483 0.0392 0.3200 2.5 5vgr:B, 6xjo:A, 6xjo:B
22 8uxl:A 4232 105 0.0755 0.0059 0.2381 3.0 7u9q:A, 7u9q:D, 7u9q:B, 7u9q:C, 7u9r:A, 7u9r:D, 7u9r:B, 7u9r:C, 7u9t:A, 7u9t:D, 7u9t:B, 7u9t:C, 7u9x:A, 7u9x:B, 7u9x:C, 7u9x:D, 7u9z:A, 7u9z:B, 7u9z:C, 7u9z:D, 7ua1:A, 7ua1:B, 7ua1:C, 7ua1:D, 7ua5:A, 7ua5:B, 7ua5:C, 7ua5:D, 7ua9:A, 7ua9:B, 7ua9:C, 7ua9:D, 8uq2:A, 8uq2:B, 8uq2:C, 8uq2:D, 8uq3:A, 8uq3:B, 8uq3:C, 8uq3:D, 8uq4:A, 8uq4:B, 8uq4:C, 8uq4:D, 8uq5:A, 8uq5:B, 8uq5:C, 8uq5:D, 8uxc:A, 8uxc:B, 8uxc:C, 8uxc:D, 8uxe:A, 8uxe:B, 8uxe:C, 8uxe:D, 8uxf:A, 8uxf:B, 8uxf:C, 8uxf:D, 8uxg:A, 8uxg:B, 8uxg:C, 8uxg:D, 8uxl:B, 8uxl:C, 8uxl:D, 8uxm:A, 8uxm:B, 8uxm:C, 8uxm:D
23 7ua3:A 4443 105 0.0755 0.0056 0.2381 3.3 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D
24 8oqs:B 735 78 0.0544 0.0245 0.2308 5.5 4b3i:A, 4b3i:B, 4b3j:A, 4b3j:B, 7o4s:A, 7o4s:B, 7o4t:A, 7o4t:B, 7o4u:A, 7o4u:B, 7o4v:B, 7o4v:A, 8opu:A, 8opu:B, 8opv:A, 8opv:B, 8oql:A, 8oql:B, 8oqn:A, 8oqn:B, 8oqo:A, 8oqo:B, 8oqp:A, 8oqp:B, 8oqq:A, 8oqq:B, 8oqr:A, 8oqr:B, 8oqs:A, 8oqt:B, 8oqt:A, 8oqu:A, 8oqu:B, 8oqv:A, 8oqv:B, 8pf8:A, 8pf8:B
25 6p25:B 690 54 0.0514 0.0246 0.3148 8.7 6p2r:B
26 6eji:A 360 60 0.0483 0.0444 0.2667 9.6 6eji:B, 6ejj:A, 6ejj:B, 6ejk:A, 6ejk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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