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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHDGLLVNQTELFVPSLN
VDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLT

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8rwz:B 160 141 1.0000 0.8812 1.0000 7.58e-102 4ajy:V, 4awj:C, 4awj:F, 4awj:I, 4awj:L, 4b95:C, 4b95:F, 4b95:I, 4b95:L, 4b9k:C, 4b9k:F, 4b9k:I, 4b9k:L, 8bb2:L, 8bb3:L, 8bb4:P, 8bb5:C, 8bdi:L, 8bdi:F, 8bdi:I, 8bdi:C, 8bdj:C, 8bdj:F, 8bdj:I, 8bdj:L, 8bdl:C, 8bdl:F, 8bdl:I, 8bdl:L, 8bdm:I, 8bdm:F, 8bdm:C, 8bdm:L, 8bdn:C, 8bdn:F, 8bdn:I, 8bdn:L, 8bdo:C, 8bdo:F, 8bds:C, 8bdt:D, 8bdt:H, 8bdx:D, 8bdx:H, 8beb:C, 9bju:L, 9bju:I, 9bju:F, 9bju:C, 4bks:C, 4bks:F, 4bks:I, 4bks:L, 4bkt:C, 4bkt:F, 4bkt:I, 4bkt:L, 9bol:C, 9bol:F, 6bvb:V, 8c13:L, 7cjb:A, 7cjb:E, 7cjb:I, 7cjb:M, 8cqe:C, 8cqe:F, 8cqe:I, 8cqe:L, 8cqk:C, 8cqk:F, 8cqk:I, 8cqk:L, 8cql:C, 8cql:F, 8cql:I, 8cql:L, 8ei3:C, 9eqj:C, 9eqj:F, 9eqm:C, 8ewv:C, 8ewv:G, 8ewv:K, 8ewv:O, 8ewv:S, 8ewv:W, 6fmi:C, 6fmi:F, 6fmj:C, 6fmj:F, 6fmj:I, 6fmj:L, 6fmk:C, 6fmk:F, 6fmk:I, 6fmk:L, 8fy0:A, 8fy1:A, 8fy2:A, 8g1p:C, 8g1p:F, 8g1q:C, 6gfx:C, 6gfy:C, 6gfy:F, 6gfy:I, 6gfy:L, 6gfz:C, 6gfz:F, 6gfz:I, 6gfz:L, 6gmq:I, 6gmq:L, 6gmr:V, 6hax:B, 6hax:F, 6hay:B, 6hay:F, 6hr2:B, 6hr2:F, 6i7q:V, 6i7r:V, 7jto:L, 7jtp:L, 7khh:C, 5lli:C, 5lli:F, 5lli:I, 5lli:L, 1lm8:V, 1lqb:C, 5nvv:C, 5nvv:F, 5nvv:I, 5nvv:L, 5nvw:C, 5nvw:F, 5nvw:I, 5nvw:L, 5nvx:C, 5nvx:F, 5nvx:I, 5nvx:L, 5nvy:C, 5nvy:F, 5nvy:I, 5nvy:L, 5nvz:C, 5nvz:F, 5nvz:I, 5nvz:L, 5nw0:C, 5nw0:F, 5nw0:I, 5nw0:L, 5nw1:C, 5nw1:F, 5nw1:I, 5nw1:L, 5nw2:C, 5nw2:F, 5nw2:I, 5nw2:L, 8p0f:A, 8p0f:D, 8pc2:B, 8pc2:A, 7pi4:AAA, 7q2j:C, 8qjr:C, 8qjr:F, 8qjs:C, 8qjs:F, 8qjs:I, 8qjs:L, 8qu8:A, 8qvu:B, 8qvu:F, 8qw6:F, 8qw6:B, 8qw7:B, 8qw7:F, 8r5h:H, 8rx0:B, 7s4e:B, 7s4e:F, 6sis:D, 6sis:H, 5t35:D, 5t35:H, 8vl9:A, 8vlb:A, 4w9c:C, 4w9c:F, 4w9c:I, 4w9c:L, 4w9d:C, 4w9d:F, 4w9d:I, 4w9d:L, 4w9e:C, 4w9e:F, 4w9e:I, 4w9e:L, 4w9f:C, 4w9f:F, 4w9f:I, 4w9f:L, 4w9g:C, 4w9g:F, 4w9g:I, 4w9g:L, 4w9h:C, 4w9h:F, 4w9h:I, 4w9h:L, 4w9i:C, 4w9i:F, 4w9i:I, 4w9i:L, 4w9j:C, 4w9j:F, 4w9j:I, 4w9j:L, 4w9k:C, 4w9k:F, 4w9k:I, 4w9k:L, 4w9l:C, 4w9l:F, 4w9l:I, 4w9l:L, 8wdk:V, 7z6l:B, 7z76:C, 7z77:C, 6zhc:AAA, 7znt:C, 7znt:F, 3zrc:C, 3zrc:F, 3zrc:I, 3zrc:L, 3ztc:C, 3ztc:F, 3ztc:I, 3ztc:L, 3ztd:C, 3ztd:F, 3ztd:I, 3ztd:L, 3zun:C, 3zun:F, 3zun:I, 3zun:L
2 6d7j:A 799 44 0.1206 0.0213 0.3864 0.37 6d7j:D
3 3big:A 321 40 0.0922 0.0405 0.3250 0.87 3d1r:A, 2r8t:A
4 3wem:A 830 100 0.1915 0.0325 0.2700 0.89 3w37:A, 3wel:A, 3wen:A, 3weo:A
5 5l0t:A 356 25 0.0638 0.0253 0.3600 3.4 5l0r:A, 5l0s:A, 5l0u:A, 5l0v:A, 5ub5:A
6 1iru:D 243 22 0.0780 0.0453 0.5000 5.1 8bzl:Q, 8bzl:C, 1iru:R
7 7vg8:A 108 45 0.1064 0.1389 0.3333 5.1
8 5ini:F 511 66 0.1064 0.0294 0.2273 5.7 5inf:B, 5inf:F, 5ini:A, 5ini:D, 5ini:B, 5ini:C, 5ini:E
9 2qua:A 615 62 0.1277 0.0293 0.2903 6.1 2qub:A, 2qub:C, 2qub:E, 2qub:G, 2qub:I, 2qub:K
10 2e21:A 317 55 0.1135 0.0505 0.2909 6.4 2e21:C, 2e89:A, 2e89:B, 2e89:C, 2e89:D
11 1qnf:A 475 34 0.0780 0.0232 0.3235 7.2 1owl:A, 1owm:A, 1own:A, 1owo:A, 1owp:A, 1tez:A, 1tez:B, 1tez:C, 1tez:D
12 1lvw:A 295 17 0.0851 0.0407 0.7059 7.7 1lvw:B, 1lvw:C, 1lvw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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