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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VLRKLKSGLERGLDTFDSTIEIIMQNLKTELESQETENFLEQLISRIFQVVSRLTGVRIRNVQVPDITMEATSENSANVL
IPITADVTVSLPFLGEIVDLDLNVDLQTTVSIETDTEDPQVVVGECTNNPESISLTVLHSRFGLVNDVVDIGVNLARRVV
SSVVEGELCPRFRELLESLDAECVEKLIGESQ

The query sequence (length=192) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5wd6:A 195 195 1.0000 0.9846 0.9846 1.42e-132 6o1t:A, 6o1t:B
2 4keg:A 535 113 0.1510 0.0542 0.2566 0.096 4n4x:A
3 8axc:B 532 40 0.0781 0.0282 0.3750 0.54 8axc:A, 8axc:C, 8axc:D
4 6wvj:C 1117 63 0.0990 0.0170 0.3016 0.61
5 6kcl:B 545 169 0.2292 0.0807 0.2604 0.69 6jwu:B, 6jwv:B, 6jwx:B, 6jwy:B
6 7d6l:A 142 46 0.0781 0.1056 0.3261 1.3
7 7o3e:L 445 53 0.0781 0.0337 0.2830 3.1
8 3cmc:O 334 89 0.1250 0.0719 0.2697 9.7 3cmc:P, 3cmc:Q, 3cmc:R, 1dbv:O, 1dbv:P, 1dbv:Q, 1dbv:R, 2dbv:O, 2dbv:P, 2dbv:Q, 2dbv:R, 3dbv:O, 3dbv:P, 3dbv:Q, 3dbv:R, 4dbv:O, 4dbv:P, 4dbv:Q, 4dbv:R, 1gd1:O, 1gd1:P, 1gd1:Q, 1gd1:R, 1npt:O, 1npt:P, 1npt:Q, 1npt:R, 1nq5:O, 1nq5:Q, 1nq5:A, 1nq5:C, 1nqa:O, 1nqa:P, 1nqa:Q, 1nqa:R, 1nqo:O, 1nqo:Q, 1nqo:A, 1nqo:C
9 7fgq:A 190 28 0.0677 0.0684 0.4643 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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