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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VLNSNELEHIHSTNHSVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRIHFDG
LAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVS
MLISLPSGDPDEINNALVLLSEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQYVNWKEVANDNVVSTLHEIN
IIPENYGSDNVTYDPSDLIKLLSIPGRFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNAD
FFKDVNTENRIRNTLGEYKRLDEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQEQLRAEAQRKQD

The query sequence (length=399) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3j4s:A 414 410 0.9975 0.9614 0.9707 0.0 3m89:A, 2xka:A, 2xka:B, 2xka:C, 2xka:D, 2xka:E, 2xka:F, 2xka:G, 2xkb:A, 2xkb:B, 2xkb:D, 2xkb:E, 2xkb:F, 2xkb:G, 2xkb:I, 2xkb:J, 2xkb:K
2 2xkb:C 389 408 0.9424 0.9666 0.9216 0.0 2xkb:L
3 4ei7:A 382 208 0.1178 0.1230 0.2260 0.046 4ei7:B, 4ei9:A, 4ei9:B
4 4b46:A 330 261 0.1679 0.2030 0.2567 0.081
5 3cb2:A 432 97 0.0627 0.0579 0.2577 0.55 7as4:1, 7as4:2, 7as4:O, 7as4:P, 7as4:Q, 7as4:R, 7as4:S, 7as4:T, 7as4:U, 7as4:V, 7as4:W, 7as4:X, 7as4:Y, 7as4:Z, 3cb2:B, 8va2:g, 8va2:h, 1z5v:A, 1z5w:A
6 6v6s:k 370 97 0.0652 0.0703 0.2680 0.60 6v5v:g, 6v6s:a, 6v6s:b, 6v6s:c, 6v6s:d, 6v6s:e, 6v6s:f, 6v6s:g, 6v6s:h, 6v6s:i, 6v6s:j, 6v6s:l, 6v6s:m, 6v6s:t
7 8a7l:A 346 202 0.1303 0.1503 0.2574 0.99 8a6v:A, 8a6v:B, 8a6z:A, 8a6z:B, 8a6z:C, 8a6z:D, 8a6z:E, 8a6z:F, 8a70:A, 8a73:A, 8a73:B, 8a74:A, 8a74:B, 8a78:A, 8a7a:A, 8a7b:A, 8a7c:A, 8a7c:B, 8a7j:A, 8a7j:B, 8a7k:A, 8a7k:B, 8a7r:A, 8a7u:A
8 3zid:A 360 218 0.1053 0.1167 0.1927 1.1 3zid:B
9 1odz:A 379 41 0.0426 0.0449 0.4146 1.1 1gvy:A, 1gw1:A, 1j9y:A, 1odz:B, 1r7o:A, 2whm:A
10 8uw3:A 1265 54 0.0501 0.0158 0.3704 3.5 7n8s:A, 7n94:A, 7n94:B, 8sp5:A, 8sp5:B, 8sp7:A, 8sxt:A, 8sxu:A, 1vyb:B
11 4v6w:AA 218 50 0.0501 0.0917 0.4000 4.5 6xu6:AA, 6xu7:AA, 6xu8:AA
12 5yjj:A 442 121 0.0677 0.0611 0.2231 5.6 5yjj:B, 5yjj:C, 5yjj:D, 5yjj:E, 5yjj:F
13 5yhx:N 146 23 0.0376 0.1027 0.6522 6.4 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
14 1ze1:A 308 58 0.0351 0.0455 0.2414 7.7 2ab4:A, 1r3e:A, 1ze1:B, 1ze1:C, 1ze2:A
15 3hj1:B 387 84 0.0652 0.0672 0.3095 8.1 3hiy:A, 3hiy:B, 3hj1:A
16 1ze1:D 284 58 0.0351 0.0493 0.2414 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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