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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VLLHVLFEHAVGYALLALKEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPFASSQVALENANAVSEGVVHEDLRLLLE
THLPSKVLLGVGDPKIGAAIQEELGYNCQTGGVIAEILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRV
DNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEELTMDGAKAKAI
LDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPAS
TVQILGAEKALFRALKHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGE

The query sequence (length=396) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mq8:SA 396 396 1.0000 1.0000 1.0000 0.0 7mq9:SA, 7mqa:SA
2 7ajt:CD 380 398 0.4975 0.5184 0.4950 5.42e-131 7aju:CD, 7d4i:3D, 7d5s:3D, 7d5t:3D, 7d63:3D, 6ke6:3D, 6lqp:3D, 6lqq:3D, 6lqr:3D, 6lqs:3D, 6lqt:3D, 6lqu:3D, 6lqv:3D, 6nd4:a, 7suk:SA, 5wlc:SA, 5wyj:3D, 5wyk:3D, 6zqa:CD, 6zqb:CD, 6zqc:CD, 6zqd:CD
3 5oql:T 387 407 0.4924 0.5039 0.4791 7.60e-122 6rxt:CC, 6rxu:CC, 6rxv:CC, 6rxy:CC, 6rxz:CC
4 7mq8:SB 440 411 0.4444 0.4000 0.4282 1.39e-98 7mq9:SB, 7mqa:SB
5 7aju:CE 436 410 0.4242 0.3853 0.4098 1.27e-92 7ajt:CE, 7d4i:3E, 7d5s:3E, 7d5t:3E, 7d63:3E, 6ke6:3E, 6lqp:3E, 6lqq:3E, 6lqr:3E, 6lqs:3E, 6lqt:3E, 6lqu:3E, 6lqv:3E, 7suk:SB, 5wyj:3E, 5wyk:3E, 6zqa:CE, 6zqb:CE, 6zqc:CE, 6zqd:CE, 6zqe:CE
6 6rxt:CD 420 371 0.3712 0.3500 0.3962 6.24e-84 5oql:U, 6rxu:CD, 6rxv:CD, 6rxx:CD, 6rxy:CD, 6rxz:CD
7 6nd4:b 425 276 0.3207 0.2988 0.4601 8.63e-72 5wlc:SB
8 5gin:A 375 259 0.2652 0.2800 0.4054 5.74e-48 5gin:B, 5gin:K, 5gio:A, 5gio:B, 5gio:K, 5gip:A, 5gip:B, 5gip:K, 5gip:L, 3id5:A, 3id5:E, 5jpq:S, 5jpq:T, 3pla:A, 3pla:B, 3pla:K, 7xpl:A, 7xpl:B
9 4by9:F 366 258 0.2399 0.2596 0.3682 1.86e-47 4by9:I, 4by9:C, 4by9:L, 3nmu:A, 3nmu:B, 3nvi:A, 3nvi:C, 3nvk:A, 3nvk:F
10 8r0a:L 292 231 0.1465 0.1986 0.2511 2.42e-20 6ah0:L
11 5o9z:H 413 243 0.1490 0.1429 0.2428 6.26e-20 6ahd:L, 8h6e:4D, 8h6k:4D, 8h6l:4D, 2ozb:B, 2ozb:E, 8q7n:L, 8qo9:L, 8qoz:L, 8qp8:L, 8qp9:L, 8qpa:L, 8qpb:L, 8qpe:L, 8qpk:L, 6qw6:4C, 6qx9:4C, 8qxd:L, 8qzs:L, 8r08:L, 8r09:L, 8r0b:L, 8rm5:L, 3siu:B, 3siu:E, 3siv:B, 3siv:E, 3siv:H, 3siv:K, 8y6o:L
12 3jcm:I 416 202 0.1263 0.1202 0.2475 5.83e-07 5gan:F, 5gap:F, 5nrl:F, 5zwm:L, 5zwo:L
13 1pcx:A 745 112 0.0859 0.0456 0.3036 0.082 1pd0:A, 1pd1:A
14 5tzp:A 138 51 0.0328 0.0942 0.2549 0.26 5tzq:B, 5tzq:A
15 6zga:B 786 118 0.0884 0.0445 0.2966 1.4 4bzi:E, 4bzi:L, 4bzi:M, 6gni:E, 1m2v:B, 6zga:F
16 4iiu:A 243 69 0.0530 0.0864 0.3043 1.5 4iiu:B, 4iiu:C, 4iiu:D, 4iiv:A, 4iiv:B, 4iiv:C, 4iiv:D
17 7ptr:A 725 114 0.0758 0.0414 0.2632 2.0 7ptr:B, 7ptr:C, 7ptr:D, 7ptr:E, 7ptr:F, 7ptu:A, 7ptu:B, 7ptu:C, 7ptu:D, 7ptu:E
18 7p8n:a 642 62 0.0480 0.0296 0.3065 3.1 7p5h:A, 7p5h:D, 7p5h:a, 7p5h:d, 7p8n:A, 7p91:a, 7p91:A, 7p92:A
19 2p1n:B 571 43 0.0379 0.0263 0.3488 4.5 3c6n:B, 3c6o:B, 3c6p:B, 2p1m:B, 2p1n:E, 2p1o:B, 2p1p:B, 2p1q:B
20 3ez2:B 394 26 0.0328 0.0330 0.5000 5.8 3ez2:A, 3ez6:A, 3ez6:B
21 6hq7:A 377 117 0.0884 0.0928 0.2991 6.7 6hq3:B, 6hq3:C, 6hq3:A, 6hq3:D, 6hq4:A, 6hq4:B, 6hq5:A, 6hq5:B, 6hq7:B
22 7tve:F 270 70 0.0530 0.0778 0.3000 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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