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BioLiP
>protein
VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLK

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1e8o:D 76 76 1.0000 1.0000 1.0000 4.73e-51 1e8o:B, 6frk:z, 3jaj:S4, 3jan:S4, 7obr:t, 6r6g:AE, 1ry1:D
2 4uyk:B 90 87 1.0000 0.8444 0.8736 4.82e-48 5aox:B, 5aox:E, 7nfx:t, 4uyj:B, 4uyj:D
3 4v58:G 2060 42 0.1842 0.0068 0.3333 1.5 4v58:H, 4v58:I, 4v58:J, 4v58:K, 4v58:L, 4v59:G, 4v59:H, 4v59:I, 4v59:J, 4v59:K, 4v59:L
4 8s9v:C 543 46 0.1579 0.0221 0.2609 2.8 8s9u:C
5 7jjn:A 514 46 0.2105 0.0311 0.3478 2.8 7jjn:B
6 6yef:n 60 42 0.1579 0.2000 0.2857 8.1
7 7kbu:A 221 21 0.1053 0.0362 0.3810 8.8 7kbu:B
8 6l7i:G 660 57 0.2632 0.0303 0.3509 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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