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BioLiP
>protein
VLKEQQRIKVYIERARYGKVKTIIEGIDEKEFDLEEIAKKLKAKLACGGTAKNGRIELQGDHRDRIKKLLAELGFSEELI
EVE

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zcy:A 83 83 1.0000 1.0000 1.0000 6.15e-53
2 5jb3:1 83 82 0.5181 0.5181 0.5244 4.33e-26 5jbh:1
3 4bts:AF 89 77 0.3614 0.3371 0.3896 9.29e-09 4bts:BF, 4bts:CF, 4bts:DF, 4v5o:AF, 4v5o:BF
4 6gsm:m 96 82 0.3012 0.2604 0.3049 2.12e-04 8cah:m, 6gsn:m, 3j80:j, 3j81:m, 3jam:j, 3jap:m, 4uer:F, 6zce:m
5 8s8f:m 77 68 0.2651 0.2857 0.3235 3.97e-04 8s8i:m
6 7ase:V 97 80 0.2169 0.1856 0.2250 0.014
7 7a09:Z 110 76 0.2892 0.2182 0.3158 0.024 9bln:W, 4kzx:l, 4kzy:l, 8pj1:p, 8ppk:p, 8ppl:Ip, 7qp6:p, 8xxn:C1, 6ybw:p, 6zmw:p, 6zp4:Z, 6zvj:N
8 5fhz:F 449 28 0.1928 0.0356 0.5714 0.14
9 3nwa:A 608 59 0.2410 0.0329 0.3390 0.26 4hsi:C, 3nw8:B, 3nw8:A, 3nw8:C, 3nwa:B, 3nwa:C, 3nwa:D, 3nwd:C, 3nwf:A, 3nwf:B
10 6vpq:A 87 62 0.2410 0.2299 0.3226 1.1 6vpq:B, 6vpq:C, 6vpq:E, 6vpq:F, 5vyc:l1, 5vyc:l2, 5vyc:l3, 5vyc:l4, 5vyc:l5, 5vyc:l6
11 7a6q:A 489 29 0.1928 0.0327 0.5517 1.1 7a6q:B, 5fhz:A, 5fhz:B, 5fhz:C, 5fhz:D, 5fhz:E, 5fhz:G, 5fhz:H, 7qk8:A, 7qk8:B, 7qk9:A, 7qk9:B, 6s6w:A, 6s6w:B, 6te5:A, 6te5:B, 6tgw:A, 6tgw:B, 6tgw:C, 6tgw:D, 6try:A, 6try:B
12 5abm:A 494 21 0.1566 0.0263 0.6190 3.4 5abm:B, 5abm:C, 5abm:D, 5ac0:A, 5ac0:B, 5ac1:A, 5ac1:B, 5ac1:C, 5ac1:D, 5ac2:A, 1bxs:A, 1bxs:B, 1bxs:C, 1bxs:D, 6dum:A, 8ene:A, 8ene:B, 8ene:C, 8ene:D, 7jws:A, 7jwt:A, 7jwu:A, 7jwv:A, 7jww:A, 5l2m:A, 5l2n:A, 5l2o:A, 5l2o:B, 5l2o:C, 5l2o:D, 5l2o:E, 5l2o:F, 5l2o:G, 5l2o:H, 8t0n:A, 8t0t:A, 5tei:A, 7um9:A, 4wb9:A, 8wfq:A, 8wfq:B, 8wfq:C, 8wfq:D, 8wfq:E, 8wfq:F, 8wfq:G, 8wfq:H, 4wp7:A, 4wpn:A, 4x4l:A
13 4ax8:A 450 59 0.2048 0.0378 0.2881 3.9 4azs:A, 4azt:A, 4azv:A
14 4uw0:A 501 59 0.2048 0.0339 0.2881 5.1 4azw:A
15 6vr6:D 493 52 0.2169 0.0365 0.3462 5.2 6vr6:A, 6vr6:B, 6vr6:C, 6vr6:E, 6vr6:F, 6vr6:G, 6vr6:H
16 6vwf:A 450 52 0.2169 0.0400 0.3462 5.4 6vwf:B
17 7rbw:A 381 25 0.0843 0.0184 0.2800 6.1 7rbw:B
18 8pmi:B 409 15 0.1084 0.0220 0.6000 7.2 8has:A, 8has:B, 8has:C, 8has:D, 8has:E, 8has:F, 8hau:A, 8hau:B, 8hau:C, 8hau:D, 8hau:E, 8hau:F, 8pme:A, 8pmg:A, 8pmg:B, 8pmg:C, 8pmg:D, 8pmg:E, 8pmg:F, 8pmi:A, 8pmi:C, 8pmi:D, 8pmi:E, 8pmi:F, 8pml:A, 8pml:B, 8pml:C, 8pml:D, 8pml:E, 8pml:F, 8pmm:A, 8pmm:B, 8pmm:C, 8pn1:A, 8pn1:B, 8pn1:C, 8pn1:D, 8pn1:E, 8pn1:F, 8pn2:A, 8pn2:B, 8pn2:C, 8pn2:D, 8pn2:E, 8pn2:F, 7y77:A, 7y77:B, 7y77:C
19 6z1p:AL 145 57 0.2289 0.1310 0.3333 7.3
20 2ch1:A 388 52 0.1928 0.0412 0.3077 7.8 2ch1:D, 2ch1:B, 2ch1:C, 2ch2:A, 2ch2:D, 2ch2:B, 2ch2:C
21 5hgc:A 373 26 0.0964 0.0214 0.3077 9.1
22 3lkk:B 238 31 0.1205 0.0420 0.3226 10.0 3lkk:A, 3ll5:A, 3ll5:B, 3ll5:C, 3ll5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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