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BioLiP
>protein
VLFQGPAMSLIPRTERAAFLITPTSYGKSVLGAPLLYFPAQVESNSRGLILAGTHGDETASIAGLSCALRSLPAECLKHD
VILSMNPDANQLGTRANANQVDLNRAFPTQNWTEHGTVYRWSSHTPVRDVKVKTGDKEQLEPEVDALISLIELRRPKFVV
SFHEPLAFVDDPAHSDLAKWLGKQFNLPIVDDVDYETPGSFGTWCNERQLPCITVELPPISADLTIEKHLDAFIALLQHD
P

The query sequence (length=241) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4axv:A 241 241 1.0000 1.0000 1.0000 0.0
2 5hxd:A 237 230 0.5353 0.5443 0.5609 6.37e-88 5hxd:B
3 3cdx:A 329 100 0.1286 0.0942 0.3100 0.18 3cdx:B, 3cdx:C, 3cdx:D, 3cdx:E, 3cdx:F
4 3mn8:B 386 112 0.1328 0.0829 0.2857 0.42 3mn8:A, 3mn8:C, 3mn8:D
5 2qog:B 122 68 0.0871 0.1721 0.3088 0.82 2qog:C, 3r0l:D
6 3ieh:A 268 152 0.1784 0.1604 0.2829 0.89
7 1h8l:A 380 39 0.0705 0.0447 0.4359 2.0 1qmu:A
8 1u8v:A 490 96 0.0954 0.0469 0.2396 2.7 1u8v:B, 1u8v:C, 1u8v:D
9 1u0l:A 278 64 0.0913 0.0791 0.3438 4.3 1u0l:B, 1u0l:C
10 5hvf:A 372 64 0.0830 0.0538 0.3125 5.5
11 7r56:A 137 142 0.1577 0.2774 0.2676 5.6 8a33:A, 8a36:A, 8a36:B, 8a36:C, 8a36:D, 8a37:A, 6gg9:A, 6gg9:B, 6gg9:C, 6gg9:D, 5j3w:A, 5j3w:B, 5j3w:C, 5j3w:D, 5j4e:A, 5j4e:B, 5j4e:C, 5j4e:D, 8q5e:A, 8q5e:B, 7r4s:A, 7r4s:B, 7r4s:C, 7r4s:D, 3sw1:A, 3sw1:B
12 4p10:A 402 64 0.0830 0.0498 0.3125 6.1 3d66:A, 3d66:B, 3d66:C, 3d67:A, 3d67:B, 3d67:C, 3d68:A, 3d68:B, 3d68:C, 5hvg:A, 5hvg:C, 5hvh:A, 3lms:A, 7nee:A, 7neu:A
13 4oko:A 290 62 0.0664 0.0552 0.2581 6.3 4oko:B, 4oko:C, 4oko:D
14 1vz4:D 259 72 0.0788 0.0734 0.2639 6.7 1oii:A, 1oii:B, 1oii:D, 1oij:A, 1oij:B, 1oik:A, 1oik:D, 1vz4:A
15 4izt:A 263 110 0.1120 0.1027 0.2455 7.0 4izs:A, 4izu:A, 4izv:A, 4izw:A, 5ny7:A, 5nyb:A, 5nyc:A, 5nye:A
16 7ux7:A 378 79 0.0913 0.0582 0.2785 7.6 7ux6:A, 7ux6:B, 7ux7:B, 7ux8:A, 7ux8:B
17 6fh2:A 353 107 0.0871 0.0595 0.1963 7.9 6fh3:A, 6fh3:B
18 8p90:B 334 24 0.0498 0.0359 0.5000 8.3 8p90:A, 8p96:A, 8p96:B, 8pc4:A, 8pc4:B, 4qn9:A, 4qn9:B
19 1yw4:A 319 74 0.0913 0.0690 0.2973 8.4 1yw4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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