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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYL
EGKIDYGEYMDKNNVRRQATTIIADNIIFLS

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6rup:A 111 111 1.0000 1.0000 1.0000 5.95e-80 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
2 8uzt:B 100 110 0.8919 0.9900 0.9000 2.36e-65
3 3ulp:C 116 114 0.3874 0.3707 0.3772 2.50e-22 3ulp:A, 3ulp:B, 3ulp:D
4 1eqq:B 120 103 0.3243 0.3000 0.3495 1.36e-18 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
5 5odn:D 106 110 0.3333 0.3491 0.3364 3.48e-16 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
6 6irq:C 104 102 0.3423 0.3654 0.3725 2.02e-15 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
7 5odp:G 100 107 0.3153 0.3500 0.3271 9.12e-14 5odp:A
8 2vw9:A 108 105 0.2432 0.2500 0.2571 9.62e-10 2vw9:B
9 6bhx:C 102 105 0.3063 0.3333 0.3238 1.09e-08 6bhx:A, 6bhx:B
10 7dep:B 102 105 0.2883 0.3137 0.3048 1.82e-07
11 8gw5:A 99 105 0.2703 0.3030 0.2857 3.25e-06 7ym1:A
12 3vdy:A 101 105 0.2523 0.2772 0.2667 6.17e-06 3vdy:B
13 3udg:C 214 103 0.2162 0.1121 0.2330 0.065 3udg:B, 3udg:A
14 3udg:C 214 82 0.1982 0.1028 0.2683 0.42 3udg:B, 3udg:A
15 4oau:C 692 46 0.1441 0.0231 0.3478 1.2 4g8l:A, 4g8l:B, 4g8l:C, 4g8l:D, 4oav:B, 4oav:D, 1wdy:A
16 2wjd:A 244 80 0.1802 0.0820 0.2500 3.5 3qy8:A, 2wje:A, 2wjf:A
17 4fo8:C 266 32 0.0901 0.0376 0.3125 4.2 4fo7:A, 4fo7:B, 4fo7:C, 4fo7:D, 4fo8:A, 4fo8:B, 4fo8:D, 4juq:A, 4juq:B, 4juq:C, 4juq:D
18 4jqp:A 330 20 0.0901 0.0303 0.5000 5.4 4jqp:B
19 6quz:D 574 52 0.1171 0.0226 0.2500 8.4 6quz:B, 6qv0:B, 6qv0:D, 6qv1:B, 6qv1:D, 6qv2:B, 6qv2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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