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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQ
RSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIER
VKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVNLTPDKLGVVALDPDALSI
SGLHNYVKYAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPI
IGALLPSASFFLISLWLLMRK

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6mhu:G 341 341 1.0000 1.0000 1.0000 0.0
2 6s8g:G 244 135 0.3959 0.5533 1.0000 4.48e-88 7efo:G, 6mi7:G, 6s8h:G, 6s8n:G
3 6s8g:G 244 104 0.2991 0.4180 0.9808 4.27e-64 7efo:G, 6mi7:G, 6s8h:G, 6s8n:G
4 8frl:G 338 348 0.3138 0.3166 0.3075 8.91e-49 8frm:G, 8fro:G, 8ufg:G, 8ufh:G
5 8frn:G 297 347 0.2933 0.3367 0.2882 7.43e-39
6 8frn:F 289 143 0.0909 0.1073 0.2168 0.005
7 8frl:F 316 143 0.0909 0.0981 0.2168 0.005 8frm:F, 8fro:F, 8ufg:F, 8ufh:F
8 6mhu:F 311 139 0.1085 0.1190 0.2662 0.071
9 2yep:A 173 70 0.0616 0.1214 0.3000 0.32 2yep:C
10 8frp:F 223 126 0.0762 0.1166 0.2063 1.5
11 2gm8:A 217 75 0.0587 0.0922 0.2667 5.9 2gm8:B, 2gm8:C, 2gm8:D
12 7efo:F 219 86 0.0762 0.1187 0.3023 7.3
13 3aoe:F 417 68 0.0733 0.0600 0.3676 9.6 3aoe:E, 3aoe:C, 3aoe:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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