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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVDDLTADA
LANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLV
VMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKG
SDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFE
EMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEF
VHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIE

The query sequence (length=455) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8p7b:B 455 455 1.0000 1.0000 1.0000 0.0 8p7b:D, 8p7c:B, 8p7c:D, 8p7d:B, 4rqe:C, 4rqf:A
2 4l87:A 476 476 1.0000 0.9559 0.9559 0.0 8p7d:D, 4rqe:A, 4rqf:B
3 6blj:A 473 479 0.5341 0.5137 0.5073 3.53e-159
4 6blj:B 435 459 0.5165 0.5402 0.5120 6.90e-155 6blj:C
5 3lss:B 468 458 0.4989 0.4850 0.4956 2.27e-154 6rlt:A, 6rlt:B, 6rlu:A, 6rlu:B, 6rlv:A, 6rlv:B
6 3lss:A 438 439 0.5033 0.5228 0.5216 5.80e-154
7 3qo8:A 441 471 0.5121 0.5283 0.4947 8.12e-146 3qo7:A
8 6ote:A 409 459 0.4462 0.4963 0.4423 1.32e-119
9 2dq0:A 447 472 0.4066 0.4139 0.3919 4.73e-103 2dq0:B, 2zr2:A, 2zr2:B
10 2dq3:A 425 445 0.3429 0.3671 0.3506 1.32e-73 2dq3:B
11 6r1n:A 420 444 0.3363 0.3643 0.3446 1.20e-72
12 6he3:A 422 438 0.3187 0.3436 0.3311 3.79e-65 6hdz:A, 6hdz:B, 6he1:A, 6he1:B, 6he3:B
13 6h9x:A 428 421 0.3187 0.3388 0.3444 9.46e-65 7ap1:A, 6hhy:A, 6hhz:A, 6hi0:A, 6r1m:A, 6r1m:B, 6r1o:A
14 6x94:A 413 412 0.2945 0.3245 0.3252 6.88e-62
15 3err:A 527 440 0.2857 0.2467 0.2955 9.41e-57 3err:B, 1ser:A
16 1ser:B 421 315 0.2242 0.2423 0.3238 2.00e-56 1ses:A, 1ses:B, 1set:A, 1set:B
17 1wle:B 469 334 0.2242 0.2175 0.3054 1.08e-50 8ffy:B, 7tzb:A, 7tzb:B, 7u2b:B, 1wle:A
18 7u2a:B 442 334 0.2176 0.2240 0.2964 1.23e-48 8ffy:A, 7u2a:A, 7u2b:A
19 8w8j:A 572 233 0.1143 0.0909 0.2232 4.99e-06 8w8j:B, 8w8l:A, 8w8l:B, 8w9i:A, 8w9i:B
20 1nj1:A 463 266 0.1297 0.1274 0.2218 1.33e-05 1nj2:A, 1nj5:A, 1nj6:A
21 8u2p:A 401 312 0.1451 0.1646 0.2115 2.25e-04 8t5n:A
22 8u2q:A 398 285 0.1319 0.1508 0.2105 0.002 8slf:A
23 3w3s:A 527 104 0.0637 0.0550 0.2788 0.004
24 8slh:A 362 184 0.0945 0.1188 0.2337 0.007
25 8slg:B 447 166 0.0901 0.0917 0.2470 0.008 8slf:B, 8u2q:B
26 8slg:A 429 166 0.0901 0.0956 0.2470 0.012
27 5zy9:C 400 165 0.0725 0.0825 0.2000 0.25 5zy9:D, 5zy9:E
28 1lpc:A 254 81 0.0637 0.1142 0.3580 0.76 1lpd:A
29 4j56:A 504 94 0.0615 0.0556 0.2979 1.1 4b1b:A, 4b1b:B, 4j56:B, 4j56:C, 4j56:D, 4j57:A, 4j57:B
30 5znj:A 563 176 0.0791 0.0639 0.2045 1.6 5znk:A
31 5e2f:A 237 168 0.0791 0.1519 0.2143 1.8
32 1b76:A 442 210 0.1077 0.1109 0.2333 4.6 1ati:B, 1b76:B, 1ggm:A, 1ggm:B
33 2j3l:B 570 93 0.0462 0.0368 0.2258 4.7 2j3l:A, 2j3m:A, 2j3m:B
34 7adr:A 473 71 0.0440 0.0423 0.2817 5.0 7adr:D, 7ady:A, 7ady:D, 7aiz:A, 7aiz:D, 6fea:A, 6fea:D, 5n6y:A, 5n6y:D
35 4wvz:D 203 44 0.0396 0.0887 0.4091 5.7 4tlf:A, 4tlf:B, 4tlf:C, 4tlf:D, 3uss:A, 3uss:B, 4wvz:A, 4wvz:B, 4wvz:C
36 8dqj:A 251 85 0.0484 0.0876 0.2588 6.2
37 3ugt:C 427 150 0.0681 0.0726 0.2067 6.3 4eo4:A, 4eo4:B, 4eo4:C, 4eo4:D, 3ugq:A, 3ugt:A, 3ugt:B, 3ugt:D, 3uh0:A, 4yye:A, 4yye:B
38 7evv:A 489 234 0.0923 0.0859 0.1795 6.4 6a88:A, 6a88:B, 6a88:C, 6a88:D, 7evu:A, 7evu:B, 7f9p:A, 7f9q:A, 7f9q:B, 7f9r:A, 7f9s:A, 7f9t:A, 7f9t:B, 7f9u:A, 7f9u:B, 7f9u:C, 7f9u:D, 7f9v:A, 7f9v:B, 7fak:A, 7fal:A, 7fal:B, 7fam:A, 7fan:A, 7v8j:A, 7v8j:B, 7v8k:A, 7v8k:B, 7vc1:A, 7vc2:A, 7vc2:B, 7vc3:A, 7vc5:A, 5xig:A, 5xig:B, 5xig:C, 5xig:D, 5xih:A, 5xih:B, 5xih:C, 5xih:D, 5xii:A, 5xii:B, 5xii:C, 5xii:D, 5xij:A, 5xij:B, 5xij:C, 5xij:D, 5xik:A, 5xik:B, 5xik:C, 5xik:D, 5xiq:A, 5xiq:B, 5xiq:C, 5xiq:D
39 8rq9:A 316 38 0.0352 0.0506 0.4211 6.6 8rq1:A, 8rq8:A, 8rq9:C, 8rqa:A, 8rqc:A, 8rqc:D
40 7epu:B 748 81 0.0462 0.0281 0.2593 7.0 8b0a:K, 7enn:K, 7otq:K
41 7u0r:B 278 87 0.0505 0.0827 0.2644 8.4 8c49:A, 8c49:B, 8dqg:D, 8dqg:A, 8dqh:D, 8dqh:A, 8dqi:D, 8dqi:A, 8dqj:D, 7u0r:A
42 8a1g:A 218 48 0.0308 0.0642 0.2917 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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