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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VKYTPMMLNIQNMMWWNGKRNLYRATYREKTWYEISRTGAFTKGRRPVMRQKYSREALQAALAMVPPGFEVADVPRPPQR
ILAQSEGIVGRWYSNYWTLHSMRYQCLLAGVEWPLGERQRPRTNYDEPFFFADFEESKAIRDYRSRWINVNRSLVGMTKR
MKEAEEEARYMQFRKLQDTFWSNRKVLVNRVKSMYN

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hiv:Av 213 193 0.9847 0.9061 1.0000 2.35e-145 7aoi:Av, 6hix:Av, 6yxx:Av, 6yxy:Av
2 7aih:Ag 231 197 0.7653 0.6494 0.7614 3.65e-113 7am2:Ag, 7ane:Ag
3 3og2:A 986 51 0.0867 0.0172 0.3333 0.69 3ogr:A, 3ogs:A, 3ogv:A
4 6jp4:A 770 60 0.0969 0.0247 0.3167 3.0 6jp4:B, 6jp4:C, 6jph:A, 6jpn:A
5 1x77:A 174 25 0.0612 0.0690 0.4800 5.1 1x77:B
6 3p1v:A 406 19 0.0510 0.0246 0.5263 9.7 3p1v:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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