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BioLiP
>protein
VKVKFKYKGEEKEVDTSKIKKVWRFGKFVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1wvl:A 80 65 0.9692 0.7875 0.9692 8.10e-40 1azp:A, 1azq:A, 1ca5:A, 1ca6:A, 8cmn:AA, 8q2m:AA, 8qpc:AA, 1wd0:A, 1wd1:A, 1wto:A, 1wtp:A, 1wtp:B, 1wtq:A, 1wtr:A, 1wtv:A, 1wtw:A, 1wtx:A, 1xyi:A
2 5b03:D 333 64 0.7846 0.1532 0.7969 3.28e-26 5b00:A, 5b00:B, 5b00:C, 5b03:A, 5b03:B, 5b03:C, 5b0k:A, 5b0k:B, 5b0k:C, 5b0k:D, 1bbx:C, 1bbx:D, 1bf4:A, 1bnz:A, 1c8c:A, 5gwv:D, 6j8v:D, 6j8w:D
3 7c1m:A 67 64 0.6462 0.6269 0.6562 3.68e-21
4 6djv:C 615 61 0.2923 0.0309 0.3115 2.8 6dju:A, 6dju:B, 6dju:C, 6djv:A, 6djv:B
5 6w6h:C 636 61 0.2923 0.0299 0.3115 2.8 6w6e:B, 6w6e:C, 6w6g:A, 6w6g:B, 6w6g:C, 6w6h:A, 6w6h:B, 6w6h:F, 6w6i:A, 6w6i:B, 6w6i:C, 6w6j:A, 6w6j:B, 6w6j:C
6 7dhw:A 726 21 0.1385 0.0124 0.4286 4.0
7 4hut:A 191 23 0.1231 0.0419 0.3478 4.6 1g5t:A, 1g64:A, 1g64:B, 4hut:B
8 2zah:C 331 64 0.2923 0.0574 0.2969 4.9 2zah:A, 2zah:B
9 7oq6:A 399 11 0.1385 0.0226 0.8182 6.2 7oq6:B
10 4qiw:A 863 44 0.2462 0.0185 0.3636 9.2 4qiw:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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