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BioLiP
>protein
VKTPDASNHDPDPRYLRGLLKKAGISQRRAAELLGLSDRVMRYYLSEDIKEGYRPAPYTVQFALECLANDPPS

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vjm:A 73 73 1.0000 1.0000 1.0000 8.38e-50 7c0g:A, 7c0g:B, 7vjm:B
2 2ix1:A 643 44 0.2329 0.0264 0.3864 0.14 2id0:A, 2id0:B, 2id0:C, 2id0:D, 2ix0:A
3 6o9a:A 271 29 0.2055 0.0554 0.5172 0.56 6o9a:B
4 2no5:B 226 57 0.2466 0.0796 0.3158 2.2 2no5:A
5 6zj3:LX 219 31 0.1781 0.0594 0.4194 4.9
6 7ned:A 545 26 0.1507 0.0202 0.4231 5.7
7 3vtf:A 432 34 0.1507 0.0255 0.3235 7.0
8 3ftf:A 246 30 0.1918 0.0569 0.4667 8.7 3fte:A, 3r9x:B
9 4f07:F 155 49 0.2055 0.0968 0.3061 9.8 4f07:A, 4f07:B, 4f07:C, 4f07:G, 4f07:D, 4f07:E, 4f07:H, 4f07:I, 4f07:J, 4f07:L, 4f07:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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