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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VKQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF
TMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQN
FPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLVEQVPTMLQYATHIKSDSLYNTPPTFS
IYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVG
LNGHRSVGGCRASIYNAVPIDACIALRELMIQFKENA

The query sequence (length=357) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4azj:A 360 360 1.0000 0.9917 0.9917 0.0 4azj:B, 4azk:A, 4azk:B, 2bhx:A, 2bhx:B, 2bi1:A, 2bi1:B, 2bi2:A, 2bi2:B, 2bi3:A, 2bi3:B, 2bi5:A, 2bi5:B, 2bi9:A, 2bi9:B, 2bia:A, 2bia:B, 2bie:A, 2bie:B, 2big:A, 2big:B, 1w23:A, 1w23:B
2 1bt4:A 361 358 0.5742 0.5679 0.5726 9.27e-158 2c0r:A, 2c0r:B, 1w3u:A
3 6czy:A 362 355 0.4566 0.4503 0.4592 4.50e-117 6czy:B, 6czy:C, 6czy:D, 6czz:A, 6czz:B, 6czz:C, 6czz:D
4 6xdk:D 359 357 0.4258 0.4234 0.4258 4.72e-112 6xdk:B, 6xdk:A, 6xdk:C
5 8a5v:E 366 363 0.4622 0.4508 0.4545 9.22e-111 8a5v:C, 8a5v:F, 8a5v:B, 8a5v:A, 8a5v:G, 8a5v:H, 8a5w:D, 8a5w:C, 8a5w:E, 8a5w:F, 8a5w:B, 8a5w:A, 8a5w:H, 3e77:A, 3e77:B
6 5yb0:B 349 357 0.4454 0.4556 0.4454 2.20e-103 5yb0:A, 5yb0:C, 5yb0:D, 5yb0:E, 5yb0:F, 5yb0:G, 5yb0:H, 5yb0:I, 5yb0:J, 5yb0:K, 5yd2:A, 5yd2:B
7 3qbo:B 359 357 0.4258 0.4234 0.4258 5.02e-101 3qbo:A
8 1bjo:A 360 358 0.4118 0.4083 0.4106 2.37e-97 1bjo:B
9 7t7j:B 360 358 0.4230 0.4194 0.4218 2.58e-97 7t7j:A
10 3qm2:B 331 358 0.4034 0.4350 0.4022 5.81e-82 3qm2:A
11 3ffr:A 361 316 0.2157 0.2133 0.2437 2.81e-12
12 2fyf:A 368 365 0.2185 0.2120 0.2137 1.43e-09 2fyf:B, 3vom:A, 3vom:B
13 2dr1:A 381 290 0.1821 0.1706 0.2241 1.48e-07 2dr1:B
14 6mfb:D 386 247 0.1569 0.1451 0.2267 1.39e-04 6mfb:A, 6mfb:B, 6mfb:C
15 1iug:A 348 179 0.1345 0.1379 0.2682 0.058 1iug:B
16 2huf:A 385 209 0.1232 0.1143 0.2105 0.66 2huf:B, 2hui:A, 2hui:B, 2huu:A, 2huu:B
17 3kgw:B 388 327 0.1821 0.1675 0.1988 3.0 3kgw:A, 3kgx:A
18 3zja:A 114 74 0.0532 0.1667 0.2568 5.2
19 3zok:A 365 23 0.0336 0.0329 0.5217 6.8 3zok:B, 3zok:C, 3zok:D
20 8d2q:A 906 55 0.0392 0.0155 0.2545 7.8
21 6wbr:A 942 55 0.0392 0.0149 0.2545 9.1 6wc0:A
22 8d2o:A 749 55 0.0392 0.0187 0.2545 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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