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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGI
DDQDYQNSVTRSAPINRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVT
RNVFSHRLTVHRKYDLKGSEASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGI
HDVDRAEQFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPPEQYSKRFNEFMSNIL

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3x03:A 320 318 0.9934 0.9344 0.9403 0.0 7em1:A, 7em1:B, 7em2:A, 7em2:B, 7em3:A, 7em4:A, 7em4:B, 7em5:A, 7em6:A, 7em7:A, 7em8:A, 6k4g:A, 6k4g:B, 6k4h:A, 6k4h:B, 3x01:A, 3x02:A, 3x02:B, 3x03:B, 3x04:A, 3x04:B, 3x05:A, 3x05:B, 3x06:A, 3x06:B, 3x07:A, 3x08:A, 3x09:A, 3x09:B, 3x0a:A, 3x0a:B, 3x0b:A, 3x0b:B, 3x0c:A, 3x0c:B
2 7em5:B 297 302 0.9668 0.9798 0.9636 0.0 7em6:B
3 7n81:B 307 324 0.9236 0.9055 0.8580 0.0 3x01:B
4 6ym4:A 322 319 0.7940 0.7422 0.7492 8.90e-178 7n7j:A, 7n7k:A, 7n7l:A, 7n7m:A, 7n7n:A, 7n7o:A, 6osp:A, 6osp:B, 6ux9:A, 6ux9:B, 6ym3:A, 6ym3:B, 6ym4:B, 6ym5:A, 6ym5:B
5 8c8c:A 297 304 0.7641 0.7744 0.7566 1.87e-173
6 7qpn:A 317 316 0.7076 0.6719 0.6741 5.43e-154 8bq4:A, 8bq4:B, 7qie:A, 7qie:B, 7qie:C, 7qie:D, 7qpn:B
7 6cmw:A 307 322 0.3256 0.3192 0.3043 1.05e-35 6cn2:A, 5e3t:A, 5e3u:A
8 4v61:B3 65 21 0.0233 0.1077 0.3333 1.5 6eri:Ab, 5h1s:c, 5mlc:3, 5mmi:2, 5mmm:2, 5x8p:2, 5x8t:2
9 8w2h:A 761 44 0.0432 0.0171 0.2955 2.3 7lw1:A, 7lw1:D, 7lw1:E, 7lw1:F, 8w2g:A, 8w2g:B, 8w2g:D, 8w2g:C, 8w2h:B, 8w2h:C, 8w2h:D, 8w2j:E, 8w2j:F, 8w2j:G, 8w2j:H, 8w2j:A, 8w2j:B, 8w2j:C, 8w2j:D
10 8buu:1 49 16 0.0332 0.2041 0.6250 3.0 7aqc:c, 7aqd:c, 7as8:g, 7as9:g, 6ha1:1, 6ha8:1, 6htq:2, 3j9w:B5, 5njt:q, 7o5b:1, 7ope:g, 8qcq:1, 7qgu:c, 7qh4:c, 8qpp:1, 7qv1:1, 7qv2:1, 7qv3:1, 8r55:1, 8s1p:1, 8s1u:1, 6tnn:q, 6tpq:q
11 4e4f:B 381 56 0.0465 0.0367 0.2500 3.7 4e4f:C, 4il2:A, 4il2:C, 4il2:D
12 8p2f:6 48 16 0.0299 0.1875 0.5625 5.8 7asm:1, 7asn:1, 7aso:T, 7asp:A, 6fxc:A1, 6fxc:B1, 6hma:1, 5ngm:A1, 8p2g:6, 8p2h:6, 7p48:1, 6s0x:1, 6s0z:1, 6s12:1, 6s13:1, 5tcu:LS, 8y36:1, 8y37:1, 8y38:1, 8y39:1
13 9b00:16 53 16 0.0233 0.1321 0.4375 8.9 5a9z:Ac, 5aa0:Ac, 7azo:L33A, 7azo:L33B, 7azs:L33A, 7azs:L33B, 9b00:26, 6b4v:DA, 6b4v:HC, 6boh:DA, 6boh:IC, 6bok:DA, 6bok:GC, 6buw:R6, 6buw:Y6, 6bz6:R6, 6bz6:Y6, 6bz7:R6, 6bz7:Y6, 6bz8:R6, 6bz8:Y6, 6c5l:B6, 6c5l:D6, 6cae:16, 6cae:26, 6cfj:16, 6cfj:26, 6cfk:16, 6cfk:26, 6cfl:16, 6cfl:26, 8cvj:16, 8cvj:26, 8cvk:16, 8cvk:26, 8cvl:16, 8cvl:26, 5czp:Y6, 5czp:R6, 6czr:16, 6czr:26, 5d8b:Z, 5d8b:VB, 5dfe:Y6, 5dfe:R6, 5dox:16, 5dox:26, 5doy:16, 5doy:26, 8ekb:16, 8ekb:26, 8ev6:16, 8ev6:26, 8ev7:16, 8ev7:26, 5f8k:16, 5f8k:26, 8fc1:16, 8fc1:26, 8fc2:16, 8fc2:26, 8fc3:16, 8fc3:26, 8fc4:16, 8fc4:26, 8fc5:16, 8fc5:26, 8fc6:16, 8fc6:26, 5fdu:16, 5fdu:26, 5fdv:16, 5fdv:26, 6fkr:16, 6fkr:26, 8fom:R6, 8fom:Y6, 8fon:R6, 8fon:Y6, 8g29:16, 8g29:26, 8g2a:16, 8g2a:26, 8g2b:16, 8g2b:26, 8g2c:16, 8g2c:26, 8g2d:16, 8g2d:26, 6gsl:O8, 6gzq:b1, 6gzx:b1, 6gzx:b2, 6gzz:b1, 6gzz:b2, 5hau:14, 5hau:24, 5hcp:16, 5hcp:26, 5hcq:16, 5hcq:26, 5hcr:16, 5hcr:26, 5hd1:16, 5hd1:26, 5ib7:O8, 5imq:x, 5imr:x, 5j30:R6, 5j30:Y6, 5j3c:R6, 5j3c:Y6, 5j4b:16, 5j4b:26, 5j4c:16, 5j4c:26, 5j4d:DA, 5j4d:IC, 5j8b:6, 7jql:16, 7jql:26, 7jqm:16, 7jqm:26, 4l47:R6, 4l47:Y6, 4l71:R6, 4l71:Y6, 4lel:R6, 4lel:Y6, 4lfz:R6, 4lfz:Y6, 7lh5:B6, 7lh5:D6, 4lnt:R6, 4lnt:Y6, 4lsk:R6, 4lsk:Y6, 4lt8:R6, 4lt8:Y6, 7md7:16, 7md7:26, 6n1d:AL33, 6n1d:BL33, 6n9e:16, 6n9e:26, 6n9f:16, 6n9f:26, 6nd5:16, 6nd5:26, 6nd6:16, 6nd6:26, 6ndk:R6, 6ndk:Y6, 6nsh:R6, 6nsh:Y6, 6nta:R6, 6nta:Y6, 6nuo:R6, 6nuo:Y6, 6nwy:R6, 6nwy:Y6, 6o3m:R6, 6o3m:Y6, 6o97:16, 6o97:26, 6of1:16, 6of1:26, 6of6:R6, 6of6:Y6, 6oj2:R6, 6oj2:Y6, 6ope:R6, 6ope:Y6, 6ord:R6, 6ord:Y6, 6osi:R6, 6osi:Y6, 5ot7:b, 6otr:R6, 6otr:Y6, 6oxa:R6, 6oxa:Y6, 6oxi:R6, 6oxi:Y6, 4p6f:R6, 4p6f:Y6, 4p70:R6, 4p70:Y6, 6q95:c, 6qnq:O8, 6qnq:K5, 6qnr:O8, 6qnr:K5, 7rq8:16, 7rq8:26, 7rq9:16, 7rq9:26, 7rqa:16, 7rqa:26, 7rqb:16, 7rqb:26, 7rqc:16, 7rqc:26, 7rqd:16, 7rqd:26, 7rqe:16, 7rqe:26, 8t8b:16, 8t8b:26, 8t8c:16, 8t8c:26, 4tua:R6, 4tua:Y6, 4tub:R6, 4tub:Y6, 4tuc:R6, 4tuc:Y6, 4tud:R6, 4tud:Y6, 4tue:R6, 4tue:Y6, 7u2h:16, 7u2h:26, 7u2i:16, 7u2i:26, 7u2j:16, 7u2j:26, 6ucq:16, 6ucq:26, 8ud6:16, 8ud6:26, 8ud7:16, 8ud7:26, 8ud8:16, 8ud8:26, 6uo1:16, 6uo1:26, 5uq7:6, 5uq8:6, 8uvr:16, 8uvr:26, 8uvs:16, 8uvs:26, 4v4x:B5, 4v4y:B5, 4v4z:B5, 4v51:B6, 4v51:D6, 4v5a:B6, 4v5a:D6, 4v5c:B6, 4v5c:D6, 4v5d:B6, 4v5d:D6, 4v5e:B6, 4v5e:D6, 4v5f:B6, 4v5f:D6, 4v5g:B6, 4v5g:D6, 4v5j:B6, 4v5j:D6, 4v5k:B6, 4v5k:D6, 4v5l:B6, 4v5m:B6, 4v5n:B6, 4v5p:B6, 4v5p:D6, 4v5q:B6, 4v5q:D6, 4v5r:B6, 4v5r:D6, 4v5s:B6, 4v5s:D6, 4v63:B6, 4v63:D6, 4v67:B6, 4v67:D6, 4v68:B6, 4v6a:B6, 4v6a:D6, 4v6f:A6, 4v6f:D6, 4v6g:B6, 4v6g:D6, 4v7j:A6, 4v7j:B6, 4v7k:A6, 4v7k:B6, 4v7l:B6, 4v7l:D6, 4v7m:B6, 4v7m:D6, 4v7p:B3, 4v7p:C3, 4v7w:B6, 4v7w:D6, 4v7x:B6, 4v7x:D6, 4v7y:B6, 4v7y:D6, 4v7z:B6, 4v7z:D6, 4v83:B3, 4v83:D3, 4v84:B3, 4v84:D3, 4v87:A6, 4v87:D6, 4v8a:A6, 4v8a:B6, 4v8b:B6, 4v8b:D6, 4v8c:A6, 4v8c:B6, 4v8d:B6, 4v8d:D6, 4v8e:A6, 4v8e:C6, 4v8f:A6, 4v8f:D6, 4v8g:B6, 4v8g:D6, 4v8h:B6, 4v8h:D6, 4v8i:B6, 4v8i:D6, 4v8j:B6, 4v8j:D6, 4v8n:B6, 4v8n:D6, 4v8o:B6, 4v8q:A6, 4v8u:B6, 4v8u:D6, 4v8x:B6, 4v8x:D6, 5v8i:16, 5v8i:26, 4v90:B6, 4v95:B6, 4v95:D6, 4v97:B6, 4v97:D6, 4v9a:B6, 4v9a:D6, 4v9b:B6, 4v9b:D6, 4v9h:B6, 4v9i:B6, 4v9i:D6, 4v9j:B6, 4v9j:D6, 4v9k:B6, 4v9k:D6, 4v9l:B6, 4v9l:D6, 4v9m:B6, 4v9m:D6, 4v9n:B6, 4v9n:D6, 4v9q:A3, 4v9q:C3, 4v9r:B6, 4v9r:D6, 4v9s:B6, 4v9s:D6, 5vp2:16, 5vp2:26, 5vpo:R6, 5vpo:Y6, 5vpp:R6, 5vpp:Y6, 8vtu:16, 8vtu:26, 8vtv:16, 8vtv:26, 8vtw:16, 8vtw:26, 8vtx:16, 8vtx:26, 8vty:16, 8vty:26, 1vvj:R6, 1vvj:Y6, 1vy4:B6, 1vy4:D6, 1vy5:B6, 1vy5:D6, 1vy6:B6, 1vy6:D6, 1vy7:B6, 1vy7:D6, 4w29:B6, 4w29:D6, 4w2e:6, 4w2f:B6, 4w2f:D6, 4w2g:B6, 4w2g:D6, 4w2h:B6, 4w2h:D6, 4w2i:B6, 4w2i:D6, 4w4g:R6, 4w4g:Y6, 5w4k:16, 5w4k:26, 5wis:16, 5wis:26, 5wit:16, 5wit:26, 4wpo:A6, 4wpo:C6, 4wq1:O8, 4wq1:K5, 4wqf:A6, 4wqf:C6, 4wqr:O8, 4wqr:K5, 4wqu:A6, 4wqu:C6, 4wqy:A6, 4wqy:C6, 4wro:O8, 4wsd:O8, 4wsd:K5, 4wt1:O8, 4wt1:K5, 4wt8:C7, 4wt8:D7, 4wzd:O8, 4wzd:K5, 4xej:AL33, 4xej:BL33, 6xhv:16, 6xhv:26, 6xhw:16, 6xhw:26, 6xhx:16, 6xhx:26, 6xhy:16, 6xhy:26, 6xqd:16, 6xqd:26, 6xqe:16, 6xqe:26, 4y4o:16, 4y4o:26, 4y4p:16, 4y4p:26, 4ypb:R6, 4ypb:Y6, 4yzv:R6, 4yzv:Y6, 4z3s:16, 4z3s:26, 4z8c:16, 4z8c:26, 4zer:16, 4zer:26, 5zlu:y, 4zsn:R6, 4zsn:Y6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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