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BioLiP
>protein
VKKGFRAAFRFQKELERQRLLRCPPPPVRRSEKPNWDYHAEIQAFGHRLQENFSLDLLKTAFVNSCYIKSEEAKRQQLGI
VLLNLKSNQELSEQGTSFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPPAVLQQT
FFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKRNVSAPESRLTRQSGGTTALPLYFVGL
YCDKKLIAEGPGETVLVAEEEAARVALRKLYGFTENRRPWNYSKPK

The query sequence (length=286) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7l08:c 289 289 0.9965 0.9862 0.9862 0.0 7a5f:c3, 7a5g:c3, 7a5h:c, 7a5i:c3, 7a5j:c, 7a5k:c3, 8any:c, 6i9r:c, 3j7y:c, 3j9m:c, 8k2a:Lr, 8k2b:Lr, 7l20:c, 6nu2:c, 6nu3:c, 7o9k:c, 7o9m:c, 7odr:c, 7ods:c, 7odt:c, 7of0:c, 7of2:c, 7of3:c, 7of4:c, 7of5:c, 7of6:c, 7of7:c, 7og4:c, 7oi6:c, 7oi7:c, 7oi8:c, 7oi9:c, 7oia:c, 7oib:c, 7oic:c, 7oid:c, 7oie:c, 8oir:Bt, 8oit:Bt, 5ool:c, 5oom:c, 7pd3:c, 8pk0:c, 7po4:c, 7qh6:c, 7qi4:c, 7qi5:c, 7qi6:c, 8qsj:c, 8qu5:c, 6vlz:c, 6vmi:c, 8xt0:Lr, 8xt1:Lr, 8xt2:Lr, 8xt3:Lr, 6zm5:c, 6zm6:c, 6zs9:c, 6zsa:c, 6zsb:c, 6zsc:c, 6zsd:c, 6zse:c, 6zsg:c
2 5aj4:Bh 289 289 0.8951 0.8858 0.8858 0.0 4ce4:h, 6gaw:Bh, 6gb2:Bh, 7nqh:Bh, 7nql:Bh, 7nsh:Bh, 7nsi:Bh, 7nsj:Bh, 8oin:Bt, 8oiq:Bt, 7qh7:c, 6ydp:Bh, 6ydw:Bh
3 3j6b:5 326 224 0.1573 0.1380 0.2009 1.36e-05 5mrc:5, 5mre:5, 5mrf:5
4 6ywe:5 350 117 0.0909 0.0743 0.2222 7.79e-05 6yws:5, 6ywv:5, 6ywx:5, 6ywy:5
5 6lxd:A 918 205 0.1678 0.0523 0.2341 0.037 9asm:A, 9asn:A, 9aso:A, 9asp:A, 9asq:A, 6v5b:A, 6v5c:A
6 5b16:A 722 201 0.1608 0.0637 0.2289 0.14
7 1nf7:A 454 154 0.1294 0.0815 0.2403 0.68 1jr1:A, 1nf7:B
8 8g8f:A 491 128 0.1049 0.0611 0.2344 1.2 8g8f:B, 8g8f:C, 8g8f:D, 8g8f:E, 8g8f:F, 8g8f:G, 8g8f:H, 8g9b:A, 8g9b:B, 8g9b:C, 8g9b:D, 8g9b:E, 8g9b:F, 8g9b:G, 8g9b:H, 6i0m:A, 6i0o:B, 6u8n:A, 6u8n:B, 6u8n:C, 6u8n:D, 6u8n:E, 6u8n:F, 6u8n:G, 6u8n:H, 6u8r:D, 6u8r:A, 6u8r:B, 6u8r:C, 6u8r:H, 6u8r:E, 6u8r:F, 6u8r:G, 6u9o:A, 6u9o:B, 6u9o:C, 6u9o:D, 6u9o:E, 6u9o:F, 6u9o:G, 6u9o:H, 6ua2:B, 6ua2:A, 6ua2:D, 6ua2:C, 6ua2:F, 6ua2:E, 6ua2:H, 6ua2:G, 6ua4:B, 6ua4:A, 6ua4:D, 6ua4:C, 6ua4:F, 6ua4:E, 6ua4:H, 6ua4:G, 6uaj:A, 6uaj:B, 6uaj:C, 6uaj:D, 6uaj:E, 6uaj:F, 6uaj:G, 6uaj:H, 6udo:A, 6udo:B, 6udo:C, 6udo:D, 6udo:E, 6udo:F, 6udo:G, 6udo:H, 6udq:A, 6udq:B, 6udq:C, 6udq:D, 6udq:E, 6udq:F, 6udq:G, 6udq:H
9 8fuz:A 390 128 0.1049 0.0769 0.2344 1.2 8foz:A, 8foz:B, 8foz:C, 8foz:D, 8foz:E, 8foz:F, 8foz:G, 8foz:H, 8fuz:B, 8fuz:C, 8fuz:D, 8fuz:E, 8fuz:F, 8fuz:G, 8fuz:H, 1jr1:B, 6u8e:A, 6u8e:B, 6u8e:C, 6u8e:D, 6u8e:E, 6u8e:F, 6u8e:G, 6u8e:H, 6u8s:A, 6u8s:B, 6u8s:C, 6u8s:D, 6u8s:E, 6u8s:F, 6u8s:G, 6u8s:H, 6ua5:A, 6ua5:B, 6ua5:C, 6ua5:D, 6ua5:E, 6ua5:F, 6ua5:G, 6ua5:H, 6udp:A, 6udp:B, 6udp:C, 6udp:D, 6udp:E, 6udp:F, 6udp:G, 6udp:H
10 1b3o:B 410 128 0.1049 0.0732 0.2344 1.3
11 3al0:B 482 117 0.1049 0.0622 0.2564 1.3
12 1nfb:A 396 128 0.1049 0.0758 0.2344 1.5 1nfb:B
13 1e5q:A 449 60 0.0594 0.0379 0.2833 1.7 1e5q:B, 1e5q:C, 1e5q:D, 1e5q:E, 1e5q:F, 1e5q:G, 1e5q:H
14 6uc2:A 453 89 0.0804 0.0508 0.2584 2.1 6i0m:B, 6i0o:A, 6uc2:B, 6uc2:C, 6uc2:D, 6uc2:E, 6uc2:F, 6uc2:G, 6uc2:H
15 1b3o:A 304 89 0.0804 0.0757 0.2584 2.3
16 3shx:A 175 26 0.0420 0.0686 0.4615 4.1 6i36:A, 6i9p:A, 6i9t:A, 6iaf:A, 6iaj:A, 5j8s:A, 5j8w:A, 5j93:A, 5j9v:A, 5jac:A, 3ka3:A, 3ka4:A, 3ka6:A, 3ka8:A, 3ka9:A, 4lpj:A, 4lpm:A, 4lpn:A, 4lqh:A, 4lqj:A, 4lqv:A, 4lyu:A, 4lyx:A, 1mfr:A, 1mfr:B, 1mfr:C, 1mfr:D, 1mfr:E, 1mfr:F, 1mfr:G, 1mfr:H, 1mfr:I, 1mfr:J, 1mfr:K, 1mfr:L, 1mfr:M, 1mfr:N, 1mfr:O, 1mfr:P, 1mfr:Q, 1mfr:R, 1mfr:S, 1mfr:T, 1mfr:U, 1mfr:V, 1mfr:W, 1mfr:X, 4mjy:A, 4mku:A, 4ml5:A, 4mn9:A, 4my7:A, 3rbc:A, 3rbc:B, 3rbc:C, 3rbc:D, 3rbc:E, 3rbc:F, 3rbc:G, 3rbc:H, 3rbc:I, 3rbc:J, 3rbc:K, 3rbc:L, 3rbc:M, 3rbc:N, 3rbc:O, 3rbc:P, 3rbc:Q, 3rbc:R, 3rbc:S, 3rbc:T, 3rbc:U, 3rbc:V, 3rbc:W, 3rbc:X, 3re7:A, 3re7:B, 3re7:C, 3re7:D, 3re7:E, 3re7:F, 3re7:G, 3re7:H, 3re7:I, 3re7:J, 3re7:K, 3re7:L, 3re7:V, 3re7:M, 3re7:N, 3re7:O, 3re7:P, 3re7:Q, 3re7:R, 3re7:S, 3re7:T, 3re7:U, 3re7:W, 3re7:X, 3rgd:A, 3rgd:B, 3rgd:C, 3rgd:D, 3rgd:E, 3rgd:F, 3rgd:G, 3rgd:H, 3rgd:I, 3rgd:J, 3rgd:K, 3rgd:L, 3rgd:M, 3rgd:N, 3rgd:O, 3rgd:P, 3rgd:Q, 3rgd:R, 3rgd:S, 3rgd:T, 3rgd:U, 3rgd:V, 3rgd:W, 3rgd:X, 3se1:A, 3sh6:A, 5xhi:A, 5xhm:A, 5xhn:A, 5xho:A
17 7qqb:B 423 34 0.0559 0.0378 0.4706 5.6
18 6lxe:A 768 94 0.0804 0.0299 0.2447 6.4
19 5mrc:9 202 129 0.1084 0.1535 0.2403 8.7 3j6b:9, 5mre:9, 5mrf:9
20 6h70:A 290 39 0.0385 0.0379 0.2821 9.9 6h70:B, 6h72:A, 6h72:B, 5kw9:A, 5n7m:A, 5n7m:B, 2zl5:A, 2zl5:B, 2zl6:B, 2zl6:A, 2zl7:A, 2zl7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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