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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VKIVTVKTQAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIARIAAAN
GIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAVCP
DLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRSIFDFSALKELLSRLKIRIDAMHGVVGPYVKKILCEELGAP
ANSAVNCVPLEDFGGHHPGPNYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQT
GVRGFARSMPTSGALDRVASATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRK
QSVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISR
NQGLRLIFTDGSRIVFRLSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT

The query sequence (length=552) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sno:A 573 561 0.9239 0.8901 0.9091 0.0 1c47:A, 1c4g:A, 5epc:A, 5epc:B, 5f9c:A, 5jn5:A, 5jn5:B, 3pmg:A, 3pmg:B, 7s0w:A, 6snp:A, 6snq:A, 5tr2:A, 5tr2:B, 6uiq:B, 6uiq:A, 6uo6:A, 6uo6:B, 5vbi:A, 5vbi:B, 5vec:A, 5vec:B, 5vg7:A, 5vg7:B, 5vin:A, 5vin:B
2 7s0w:B 499 537 0.8877 0.9820 0.9125 0.0
3 6y8y:A 572 562 0.6739 0.6503 0.6619 0.0 6y8x:AA, 6y8z:A
4 7p5o:B 558 570 0.5344 0.5287 0.5175 0.0 7p5o:A
5 7pjc:B 553 566 0.5254 0.5244 0.5124 0.0 7pjc:A
6 1kfq:A 571 579 0.5181 0.5009 0.4940 2.37e-178 1kfi:A, 1kfi:B, 1kfq:B
7 4qg5:A 565 573 0.4964 0.4850 0.4782 5.04e-175 4qg5:B, 4qg5:C, 4qg5:D
8 1wqa:A 455 476 0.2138 0.2593 0.2479 7.86e-17 1wqa:B, 1wqa:C, 1wqa:D
9 2fuv:A 545 400 0.1957 0.1982 0.2700 1.56e-15 2fuv:B, 3na5:A, 3na5:B, 3olp:A, 3olp:B
10 4il8:A 459 272 0.1341 0.1612 0.2721 7.51e-11 3bkq:X, 3c04:A, 2fkf:A, 2fkm:X, 2h4l:X, 2h5a:X, 1k2y:X, 1k35:A, 4mrq:A, 1p5d:X, 1p5g:X, 1pcj:X, 1pcm:X, 3rsm:A
11 3uw2:A 458 309 0.1431 0.1725 0.2557 3.46e-08
12 7ojr:A 445 381 0.1504 0.1865 0.2178 3.14e-06 7oml:A
13 3i3w:A 441 400 0.1721 0.2154 0.2375 8.71e-06 3i3w:B
14 5bmp:A 449 380 0.1558 0.1915 0.2263 2.91e-04 5bmn:A, 5kl0:A, 6mlf:A, 6mlh:A, 6mlw:A, 6mnv:A, 6n1e:A, 6nn1:A, 6nn2:A, 6nnn:A, 6nno:A, 6nnp:A, 6nns:A, 6nnt:A, 6nnu:A, 6nol:A, 6noq:A, 6np8:A, 6npx:A, 6nqe:A, 6nqf:A, 6nqg:A, 6nqh:A
15 4hjh:A 467 259 0.1123 0.1328 0.2394 0.002 4hjh:B
16 7sqc:1B 1660 56 0.0362 0.0120 0.3571 0.84
17 7sqc:1C 1700 56 0.0362 0.0118 0.3571 0.84 7sqc:1D
18 7kmq:B 754 79 0.0380 0.0279 0.2658 1.3 7kmq:A
19 1v5y:A 217 64 0.0344 0.0876 0.2969 5.3 1v5y:B, 1v5z:A, 1v5z:B, 1vfr:A, 1vfr:B
20 2dkc:A 536 87 0.0453 0.0466 0.2874 6.8 2dkc:B, 2dkd:A, 2dkd:B
21 7ap5:BBB 184 58 0.0344 0.1033 0.3276 7.2 7ap5:DDD, 7ap5:FFF, 7ap5:HHH, 7ap5:JJJ, 7ap5:LLL, 7ap5:NNN, 7ap5:PPP, 5aqd:O, 5aqd:M, 5aqd:N, 5aqd:Q, 5aqd:R, 5aqd:P, 5aqd:U, 5aqd:S, 5aqd:T, 5aqd:W, 5aqd:X, 5aqd:V, 7f86:M, 7f86:N, 7f86:C, 7f86:P, 7f86:G, 7f86:V, 7f86:K, 7f86:I, 7f86:E, 7f86:R, 7f86:T, 7f86:X, 5fvb:O, 5fvb:M, 5fvb:N, 5fvb:Q, 5fvb:R, 5fvb:P, 5fvb:U, 5fvb:S, 5fvb:T, 5fvb:W, 5fvb:X, 5fvb:V, 5nb3:O, 5nb3:M, 5nb3:N, 5nb3:Q, 5nb3:R, 5nb3:P, 5nb3:U, 5nb3:S, 5nb3:T, 5nb3:W, 5nb3:X, 5nb3:V, 5nb4:O, 5nb4:M, 5nb4:N, 5nb4:Q, 5nb4:R, 5nb4:P, 5nb4:U, 5nb4:S, 5nb4:T, 5nb4:W, 5nb4:X, 5nb4:V
22 2fsn:B 311 110 0.0598 0.1061 0.3000 7.4 2fsn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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