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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVIN
TAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVT
RTVPIKAVGFCHGHYGVMEIVEKLGLEEEKVDWQVAGVNHGIWLNRFRYNGGNAYPLLDKWIEEKSKDWKPENPFNDQLS
PAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEITKKVAKFIKENPSVRLS
DLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALLNDNKARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHP
EKIEPPLPDRVVKYYLRPRIMRMEMALEAFLTGDIRIIKELLYRDPRTKSDEQVEKVIEEILALPENEEMRKHYLK

The query sequence (length=476) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1obb:A 478 476 1.0000 0.9958 1.0000 0.0 1obb:B
2 1vjt:A 471 484 0.4979 0.5032 0.4897 7.16e-163 7br4:A, 7brf:A, 7ctl:A, 7ctm:A, 6kcx:A, 3u95:A, 3u95:B, 3u95:C, 3u95:D, 3u95:E, 3u95:F
3 3fef:A 434 485 0.2437 0.2673 0.2392 1.05e-20 3fef:B, 3fef:C, 3fef:D
4 6wbt:A 442 411 0.2017 0.2172 0.2336 1.59e-14 6wbt:B, 6wbt:C, 6wbt:D
5 5c3m:B 411 208 0.1366 0.1582 0.3125 2.49e-14 5c3m:A, 5c3m:C, 5c3m:D
6 5c3m:B 411 108 0.0672 0.0779 0.2963 0.14 5c3m:A, 5c3m:C, 5c3m:D
7 1u8x:X 436 411 0.1912 0.2087 0.2214 1.75e-09
8 6dvv:A 435 415 0.1849 0.2023 0.2120 3.69e-09 6dux:A, 6dux:B, 6dvv:B
9 6vc6:B 440 405 0.1954 0.2114 0.2296 1.27e-06 6vc6:A, 6vc6:C, 6vc6:D
10 1up7:A 414 215 0.1092 0.1256 0.2419 0.033 1up6:A, 1up6:C, 1up6:G, 1up7:B, 1up7:C, 1up7:D, 1up7:E, 1up7:F, 1up7:G, 1up7:H
11 1up7:A 414 94 0.0504 0.0580 0.2553 0.11 1up6:A, 1up6:C, 1up6:G, 1up7:B, 1up7:C, 1up7:D, 1up7:E, 1up7:F, 1up7:G, 1up7:H
12 7w93:A 307 62 0.0420 0.0651 0.3226 2.0 7vsk:A, 7vte:A, 7vte:B, 7vte:C, 7vte:D, 7vtf:A, 7vtf:B, 7vtf:C, 7vtf:D, 7vtg:A, 7vtg:B, 7vtg:C, 7vtg:D, 7vva:A, 7vva:B, 7vva:C, 7vva:D
13 3qfu:A 379 82 0.0546 0.0686 0.3171 2.9
14 5f5x:A 344 57 0.0399 0.0552 0.3333 4.4 5f5x:B, 5jyb:A
15 5kk5:A 1201 89 0.0441 0.0175 0.2360 4.9
16 5b43:A 1272 89 0.0441 0.0165 0.2360 5.0
17 8j62:A 180 59 0.0357 0.0944 0.2881 5.9 8j62:B
18 9bcz:A 606 99 0.0483 0.0380 0.2323 7.2
19 5ijc:B 593 77 0.0483 0.0388 0.2987 7.5 5ijc:A
20 6ihd:B 304 29 0.0231 0.0362 0.3793 9.1 6ihd:A, 6ihe:A, 6ihe:B
21 1pjc:A 361 58 0.0336 0.0443 0.2759 9.4 1say:A
22 3vq1:A 596 77 0.0483 0.0386 0.2987 9.5 7mlm:A, 3vq2:B, 3vq2:A
23 6vjn:H 214 63 0.0420 0.0935 0.3175 9.8 6xlz:H
24 2bzf:A 88 29 0.0273 0.1477 0.4483 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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