Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VKCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWREFLSTVFT

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zdt:C 70 69 1.0000 0.9857 1.0000 2.74e-46 4zdt:A
2 6sei:A 276 59 0.3188 0.0797 0.3729 1.46e-08 6sei:C
3 6seh:C 252 59 0.3043 0.0833 0.3559 1.13e-06 6seh:A
4 4xm5:A 267 57 0.2754 0.0712 0.3333 8.24e-04 4xlg:A
5 7cq3:A 298 73 0.3333 0.0772 0.3151 0.016 7cq2:B, 7cq4:A
6 7cq2:A 274 73 0.3333 0.0839 0.3151 0.017
7 1nrj:B 191 40 0.1884 0.0681 0.3250 0.22
8 6vzd:E 85 23 0.1449 0.1176 0.4348 0.35 6vyn:A, 6vyn:E, 6vyn:C, 6vyn:B, 6vyn:D, 6vyn:F, 6vyn:G, 6vyn:H, 6vzd:A, 6vzd:C, 6vzd:B
9 6mn8:A 399 31 0.1594 0.0276 0.3548 1.7
10 7ale:A 419 22 0.1014 0.0167 0.3182 3.0 7ale:B, 6yb8:A, 6yb8:B, 6yb9:A, 6yb9:B
11 6mss:A 181 42 0.1739 0.0663 0.2857 7.6
12 7z50:H 186 42 0.1739 0.0645 0.2857 7.8 7z50:G
13 3b7n:A 307 34 0.1594 0.0358 0.3235 8.1 3b7z:A, 6sld:A
14 8gl8:A 2290 29 0.1739 0.0052 0.4138 9.1 8gl6:A, 8glj:A, 8glk:A, 8glm:A, 8gln:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218