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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VKAAAQELANAKEPSDLIGPGGRDGEVPTDLEQATGLERYELLSELSGRDAFDMKPLDASRKGTLTDPIMVTSLDPYRHI
GCTGSPSGSHNLIWMTVYKDKLRRCPECGSVYKLKFMGDPN

The query sequence (length=121) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8c8q:D 121 121 1.0000 1.0000 1.0000 2.69e-88 8q1b:d
2 8dh6:d 121 120 0.5620 0.5620 0.5667 1.97e-46 6hu9:d, 6hu9:p, 6t0b:d, 6t0b:q, 6t15:d, 6ymx:d, 6ymy:d, 7z10:d
3 7o37:f 95 90 0.3140 0.4000 0.4222 1.04e-16 7o3c:f, 7o3e:f, 8pw5:s, 8pw5:f, 8pw6:s, 8pw7:s
4 3abk:F 98 90 0.3140 0.3878 0.4222 1.32e-16 3abk:S, 3abl:F, 3abl:S, 3abm:F, 3abm:S, 3ag1:F, 3ag1:S, 3ag2:F, 3ag2:S, 3ag3:F, 3ag3:S, 3ag4:F, 3ag4:S, 3asn:F, 3asn:S, 3aso:F, 3aso:S, 5b1a:F, 5b1a:S, 5b1b:F, 5b1b:S, 5b3s:F, 5b3s:S, 7coh:F, 7coh:S, 7cp5:F, 7cp5:S, 8d4t:S, 7d5w:F, 7d5w:S, 7d5x:F, 7d5x:S, 7dgq:A5, 7dgr:A6, 7dgs:B2, 7dkf:F3, 2dyr:F, 2dyr:S, 2dys:F, 2dys:S, 2eij:F, 2eij:S, 2eik:F, 2eik:S, 2eil:F, 2eil:S, 2eim:F, 2eim:S, 2ein:F, 2ein:S, 7ev7:F, 7ev7:S, 8gbt:F, 8gbt:S, 8gcq:F, 8gcq:S, 5gup:Ap, 8gvm:F, 8gvm:S, 8h8r:F, 8h8r:S, 8h8s:F, 8h8s:S, 8ijn:F, 8ijn:S, 5iy5:F, 5iy5:S, 6j8m:F, 6j8m:S, 6juw:F, 6juw:S, 6jy3:F, 6jy4:F, 5luf:3, 6nkn:F, 6nkn:S, 6nmf:F, 6nmf:S, 6nmp:F, 6nmp:S, 1occ:F, 1occ:S, 1oco:F, 1oco:S, 1ocr:F, 1ocr:S, 1ocz:F, 1ocz:S, 2occ:F, 2occ:S, 7thu:F, 7thu:S, 7tie:F, 7tie:S, 7tih:F, 7tih:S, 7tii:F, 7tii:S, 8ugh:4F, 8ugi:4F, 8ugj:4F, 8ugj:8F, 8ugl:4F, 8ugn:4F, 8ugn:8F, 8ugr:4F, 8ugr:8F, 1v54:F, 1v54:S, 1v55:F, 1v55:S, 7vuw:F, 7vuw:S, 7vvr:F, 7vvr:S, 7w3e:F, 7w3e:S, 5w97:F, 5w97:f, 5wau:F, 5wau:f, 3wg7:F, 3wg7:S, 5x19:F, 5x19:S, 5x1b:F, 5x1b:S, 5x1f:F, 5x1f:S, 3x2q:F, 3x2q:S, 5xdq:F, 5xdq:S, 5xdx:F, 5xdx:S, 7xma:F, 7xma:S, 7xmb:F, 7xmb:S, 5xth:2, 5xti:2, 5xti:B2, 7y44:F, 7y44:S, 2y69:F, 2y69:S, 2ybb:Q, 7ypy:F, 7ypy:S, 5z84:F, 5z84:S, 5z85:F, 5z85:S, 5z86:F, 5z86:S, 5zco:F, 5zco:S, 5zcp:F, 5zcp:S, 5zcq:F, 5zcq:S, 2zxw:F, 2zxw:S
5 7jro:e 94 86 0.2314 0.2979 0.3256 3.80e-09 7jrp:e
6 8b6h:DD 558 60 0.1901 0.0412 0.3833 1.30e-06 8b6h:Dd, 8bqs:DD, 8bqs:Dd, 8gym:vb, 8gym:VB, 8gzu:29, 8gzu:84, 8gzu:vb, 8gzu:VB, 7w5z:5B, 7w5z:5b
7 3fym:A 82 78 0.1818 0.2683 0.2821 1.0
8 3uwx:A 945 34 0.1074 0.0138 0.3824 4.4
9 2r6f:B 879 34 0.1074 0.0148 0.3824 4.4
10 2r6f:A 899 34 0.1074 0.0145 0.3824 4.5
11 2q9c:A 304 52 0.1240 0.0493 0.2885 6.9 2cnw:D, 2cnw:E, 2cnw:F, 2iyl:D, 2j7p:D, 2j7p:E, 2q9b:A, 2xkv:D
12 2r9z:B 453 39 0.1074 0.0287 0.3333 9.5 2r9z:A, 2rab:A, 2rab:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218