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BioLiP
>protein
VIVYGDYNNDGNVDSTDFAGLKKYIMAADHAYVKNLDVNLDNEVNAFDLAILKKYLLGMVSKLE

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2vn6:B 64 64 1.0000 1.0000 1.0000 7.30e-40 2vn5:B, 2vn5:D
2 4fl4:A 68 65 0.4375 0.4118 0.4308 1.79e-11 4fl4:D, 4fl4:G, 4fl4:J
3 1daq:A 71 63 0.4219 0.3803 0.4286 8.52e-11 1dav:A, 2mte:A
4 5nrk:B 68 65 0.3281 0.3088 0.3231 5.00e-07 5nrk:D, 5nrm:B
5 2ccl:B 62 63 0.3438 0.3548 0.3492 2.66e-06 2ccl:D, 1ohz:B
6 2ccl:B 62 25 0.1562 0.1613 0.4000 5.5 2ccl:D, 1ohz:B
7 4dh2:B 72 69 0.4219 0.3750 0.3913 4.55e-06 4dh2:D
8 3ul4:B 63 62 0.3438 0.3492 0.3548 8.44e-06
9 5lxv:B 65 61 0.3125 0.3077 0.3279 2.51e-04 5lxv:D
10 8x3a:A 151 56 0.3281 0.1391 0.3750 4.12e-04 8x39:A, 8x39:B
11 8x3a:A 151 67 0.2656 0.1126 0.2537 0.63 8x39:A, 8x39:B
12 5m0y:B 157 36 0.2188 0.0892 0.3889 0.002 5k39:B
13 6kg9:A 67 56 0.3125 0.2985 0.3571 0.065 6kgc:B, 6kgd:B, 6kge:D, 6kge:B, 6kgf:D, 6kgf:B
14 4idb:A 321 50 0.2969 0.0592 0.3800 1.0 4idc:A, 4idd:A, 4ide:A, 4idf:A
15 7yca:3 227 28 0.2031 0.0573 0.4643 2.0
16 8i9x:LB 356 74 0.3125 0.0562 0.2703 5.0 8i9r:LB, 8i9t:LB, 8i9v:LB, 8i9w:LB, 8i9y:LB, 8i9z:LB, 8ia0:LB
17 8pv1:LB 389 74 0.3125 0.0514 0.2703 5.0 7olc:LB, 7old:LB, 8oo0:LB, 8pv2:LB, 8pv3:LB, 8pv4:LB, 8pv5:LB, 8pv6:LB, 8pv7:LB, 8pv8:LB, 8pvk:LB, 8pvl:LB, 7r81:E1, 7z3n:LB, 7z3o:LB
18 4uyp:B 73 63 0.2344 0.2055 0.2381 5.7 4uyp:D, 4uyq:B
19 5n5p:B 87 20 0.1562 0.1149 0.5000 6.1 5n5p:D
20 5n5p:B 87 40 0.2500 0.1839 0.4000 7.0 5n5p:D
21 5kkb:A 469 62 0.2656 0.0362 0.2742 6.3 5kkb:B, 1nxc:A
22 1ksi:A 642 25 0.1562 0.0156 0.4000 7.0 1ksi:B, 1w2z:A, 1w2z:B, 1w2z:C, 1w2z:D
23 5dnl:A 176 30 0.1406 0.0511 0.3000 7.4 5dnl:C, 5dnl:B, 5dnx:A, 5dnx:C, 5dnx:B
24 5mio:C 477 43 0.2188 0.0294 0.3256 7.9 1v8j:A, 5xjb:A
25 6ji2:A 432 40 0.1875 0.0278 0.3000 9.2 4cxg:A, 4cxh:A, 6ji2:E, 3vmf:A, 3wxm:A, 3wxm:C, 3wxm:E, 3wxm:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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