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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VIVVGNGVLGLSVGVEIARTRPDVRVTLLGKPARQYGATPAAGAMLGAFGEVTAHALASEHGRKKHALAVQAQRLWPEWI
ESLEATGTAADGRIKTADDTVVLLNTVGHSALDDANFAAVLTALKEANAPHEEIAVESVDWIDPDPNSRPLRALHIEGEG
SVDSGILLAALERSFLQAGGRLHPVDATEIRASHGRVEGVVTDDGDFLPAGHVVVAAGARSQRLVAALPGLAHRIPRIYD
GVGVSALVDTWDGSGPATVLRTSNRAFASGLHLVPRAGGSVYIGATNAVCLEPRGAASIEETVFLFNCATHQLHRGLNGS
ELRKVQVGSRPAPIDGFPLIGGTSVEGLWMLSGTYRDGLHMSPLLARHVVSLMDGGTGVDGLREFRPERDLISAWSREEI
LDDVVRHTMATGYEFPWRLPLEWPHMMETFLQGPFAELADRLSDTYTPPADLMTAIMFSEREQQDELIAYYADVHREWH

The query sequence (length=479) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gri:F 482 479 0.9958 0.9896 0.9958 0.0 8gri:A, 8gri:B, 8gri:D, 8gri:C, 8gri:E, 8gri:G, 8gri:H, 7xqa:A, 7xqa:B, 7xqa:C, 7xqa:D, 7xqa:E, 7xqa:F, 7xqa:G, 7xqa:H, 7xx0:A, 7xx0:B, 7xx0:C, 7xx0:D, 7xx0:E, 7xx0:G, 7xx0:F, 7xx0:H, 7xxc:A, 7xxc:C, 7xxc:B, 7xxc:D, 7xxc:E, 7xxc:G, 7xxc:F, 7xxc:H, 7xxd:A, 7xxd:B, 7xxd:C, 7xxd:D, 7xxd:E, 7xxd:F, 7xxd:G, 7xxd:H, 7xxm:A, 7xxm:C, 7xxm:B, 7xxm:D, 7xxm:E, 7xxm:G, 7xxm:F, 7xxm:H, 7xxp:A, 7xxp:B, 7xxp:C, 7xxp:D, 7xxp:E, 7xxp:F, 7xxp:G, 7xxp:H, 7xxr:A, 7xxr:C, 7xxr:B, 7xxr:D, 7xxr:E, 7xxr:G, 7xxr:F, 7xxr:H, 7xye:A, 7xye:B, 7xye:C, 7xye:D, 7xye:E, 7xye:F, 7xye:G, 7xye:H, 7xyl:A, 7xyl:C, 7xyl:B, 7xyl:D, 7xyl:E, 7xyl:G, 7xyl:F, 7xyl:H, 7y0x:A, 7y0x:C, 7y0x:B, 7y0x:D, 7y0x:E, 7y0x:G, 7y0x:F, 7y0x:H
2 6j38:A 368 319 0.2004 0.2609 0.3009 7.37e-11 6j38:B, 6j39:A, 6j39:B
3 7cyx:A 363 240 0.1190 0.1570 0.2375 2.08e-07 7cyx:B
4 6pxs:A 370 235 0.1232 0.1595 0.2511 3.27e-04 6pxs:B, 6pxs:C, 6pxs:D
5 4ysh:A 370 368 0.2171 0.2811 0.2826 0.007 4ysh:B
6 3fg2:P 404 42 0.0480 0.0569 0.5476 0.070
7 3fpz:A 311 47 0.0376 0.0579 0.3830 0.20 3fpz:B, 4y4l:A, 4y4l:B, 4y4l:C, 4y4l:D
8 3jsk:A 292 47 0.0355 0.0582 0.3617 0.21 3jsk:B, 3jsk:C, 3jsk:D, 3jsk:E, 3jsk:F, 3jsk:G, 3jsk:H, 3jsk:I, 3jsk:J, 3jsk:K, 3jsk:L, 3jsk:M, 3jsk:N, 3jsk:O, 3jsk:P
9 3if9:A 364 194 0.0939 0.1236 0.2320 0.36 3if9:B, 3if9:C, 3if9:D, 1ng3:A, 1ng3:B, 1ng4:A, 1ng4:B, 1ryi:A, 1ryi:B, 1ryi:C, 1ryi:D
10 6gg2:A 494 102 0.0605 0.0587 0.2843 0.93
11 6c95:B 160 79 0.0480 0.1437 0.2911 1.1 6ppl:C, 6pw9:C
12 4rl6:A 414 104 0.0564 0.0652 0.2596 1.5 4rl6:B
13 2aiq:A 231 94 0.0459 0.0952 0.2340 2.5
14 7fgp:A 379 235 0.1190 0.1504 0.2426 4.7 7fgp:B
15 3n9t:A 286 44 0.0334 0.0559 0.3636 5.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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