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BioLiP
>protein
VIRATTWKDLDLPRLQHLIQSSFRRTLIPHYFETTPLLRAYVSENYRAAVILTKLGNVPYLDKFAVLDDAQGEGLGRAVW
SIMREETPQLFWRSRHNNQANAFYYAESDGYYKQDHWKIFWNGLHHFQQIQQCVAHCTQHPPTLID

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4nex:A 157 146 1.0000 0.9299 1.0000 2.64e-110 4nex:B, 4nf1:A, 4nf1:B, 4nf1:C, 4nf1:D, 4nf1:E, 4nf1:F, 4nf1:G, 4nf1:H
2 3s6h:A 436 135 0.4384 0.1468 0.4741 1.25e-39 4kzt:A, 4kzt:B, 4kzt:X, 4kzt:Y, 3s6g:B, 3s6g:Y, 3s6h:X, 3s6h:B, 3s6h:Y
3 4k30:A 153 149 0.3904 0.3725 0.3826 5.48e-28 4k30:B, 4k30:X, 4k30:Y
4 4ab7:H 422 107 0.2123 0.0735 0.2897 7.76e-09 4ab7:D, 3zzf:A, 3zzf:B, 3zzf:C, 3zzf:D, 3zzh:A, 3zzh:B, 3zzh:C, 3zzh:D
5 4rck:A 204 57 0.1233 0.0882 0.3158 0.70 4rck:B
6 5jph:B 144 76 0.1233 0.1250 0.2368 2.2 5jph:A, 5jph:C
7 2y9z:B 595 88 0.1507 0.0370 0.2500 3.4
8 3bb8:A 420 46 0.1027 0.0357 0.3261 3.7 3bb8:B
9 2dwc:B 409 63 0.0822 0.0293 0.1905 5.3 2dwc:A
10 6wft:A 513 129 0.2055 0.0585 0.2326 5.8 6wft:B, 6wft:C, 6wft:D, 6wft:E, 6wft:F, 6wft:G, 6wft:H, 6wft:I, 6wft:J, 6wft:K, 6wft:L, 6wft:M, 6wft:N, 6wft:O, 6wft:P, 6wft:Q, 6wft:R, 6wft:S, 6wft:T, 6wft:U, 6wft:V, 6wft:W, 6wft:X, 6wft:Y, 6wft:Z, 6wft:a, 6wft:b, 6wft:c, 6wft:d, 6wft:e, 6wft:f, 6wft:g, 6wft:h, 6wft:i, 6wft:j, 6wft:k, 6wft:l, 6wft:m, 6wft:n, 6wft:o, 6wft:p, 6wft:q, 6wft:r, 6wft:s, 6wft:t, 6wft:u, 6wft:v, 6wft:w, 6wft:x, 6wft:y, 6wft:z, 6wft:1, 6wft:2, 6wft:3, 6wft:4, 6wft:5, 6wft:6, 6wft:7, 6wft:8
11 8egr:H 313 44 0.0890 0.0415 0.2955 6.0 8egr:G
12 7n15:A 520 26 0.0890 0.0250 0.5000 6.4 5h3o:A, 5h3o:B, 5h3o:C, 5h3o:D, 7n15:B, 7n15:C, 7n15:D, 7n16:D, 7n16:A, 7n16:B, 7n16:C, 7n17:A, 7n17:B, 7n17:C, 7n17:D, 6wej:A, 6wej:B, 6wej:C, 6wej:D, 6wek:A, 6wek:B, 6wek:C, 6wek:D, 6wel:A, 6wel:B, 6wel:C, 6wel:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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