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BioLiP
>protein
VIPKGKPKSGRVWKDRSKKRFSQMLQDKPLRTSWQRKMKERQERKLAKD

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fl2:NZ 117 49 1.0000 0.4188 1.0000 1.31e-29 8fl0:NZ, 8fl3:NZ, 8fl4:NZ, 8ink:r, 8ipd:r, 8ipx:r, 8ipy:r
2 2raf:A 190 29 0.2245 0.0579 0.3793 0.96
3 8b5q:B 365 23 0.1633 0.0219 0.3478 2.5 8b5q:A, 8b5s:A, 8b5s:B, 8b62:A, 8b62:B, 8b63:A, 8b63:B
4 5hs2:A 226 24 0.1633 0.0354 0.3333 3.1
5 6x6x:A 417 30 0.2449 0.0288 0.4000 3.8 2wn6:A, 2wn7:A, 6x6r:A, 6x6r:B, 6x6v:A, 6x6v:B, 6x6v:C, 6x6v:D, 6x6x:B
6 3gqc:B 440 31 0.2449 0.0273 0.3871 6.3 3gqc:A, 3gqc:D, 3gqc:C
7 3izy:P 537 42 0.3265 0.0298 0.3810 8.2
8 6agi:B 322 24 0.2041 0.0311 0.4167 8.8 6agi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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