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BioLiP
>protein
VHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQN

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2m7q:A 69 59 1.0000 0.8551 1.0000 1.49e-39 4bmj:C, 4bmj:H, 4bmj:J, 5yt6:F, 5yt6:B, 5yt6:H
2 4z4k:A 282 56 0.9492 0.1986 1.0000 1.79e-37 5aas:A, 4bmj:A, 4bmj:B, 4bmj:D, 4bmj:E, 4bmj:F, 4bmj:G, 4bmj:I, 4bmj:K, 3vht:B, 5yt6:D, 4z4k:B, 4z4m:A, 4z4m:B
3 2mdg:A 55 42 0.2203 0.2364 0.3095 0.041
4 7ns4:i 358 30 0.2034 0.0335 0.4000 0.10
5 7ns4:i 358 26 0.1525 0.0251 0.3462 6.9
6 2wbt:A 125 35 0.2203 0.1040 0.3714 0.13 2wbt:B
7 8pmq:9 412 30 0.2034 0.0291 0.4000 0.61
8 2k5c:A 88 70 0.3051 0.2045 0.2571 1.6
9 6adi:A 418 51 0.2034 0.0287 0.2353 1.8 6adi:B, 5h3e:B, 5h3f:A, 5h3f:B, 5i95:A, 5i96:A, 5i96:B, 4ja8:A, 4ja8:B, 5svn:A, 5svn:B, 5svo:A, 5svo:B, 6vfz:A, 6vfz:B
10 7oje:A 365 45 0.2373 0.0384 0.3111 1.8 7oje:C
11 7oje:A 365 25 0.1356 0.0219 0.3200 6.5 7oje:C
12 1q17:C 295 37 0.2034 0.0407 0.3243 2.5 7f4e:A, 7f51:A, 2od2:A, 2od7:A, 2od9:A, 1q14:A, 1q17:A, 1q17:B, 1q1a:A, 2qqf:A, 2qqg:A, 1szc:A, 1szd:A
13 7w1m:H 322 53 0.2712 0.0497 0.3019 3.8 5k5h:A, 5k5i:A, 5k5j:A, 5k5l:E, 5k5l:G, 5k5l:F, 5kkq:A, 5kkq:D, 8ssq:A, 8ssq:D, 8ssr:A, 8ssr:D, 8sss:A, 8sss:D, 8sst:A, 8sst:D, 8ssu:A, 5t00:A, 5t00:D, 5t0u:A, 5t0u:D, 5und:A, 5und:B, 5yef:A, 5yef:B, 5yef:G, 5yef:J, 5yeg:A, 5yeg:B, 5yeh:A, 5yeh:B, 5yel:B, 5yel:A
14 6thh:C 816 12 0.1186 0.0086 0.5833 5.0 6yes:A
15 2muq:A 44 23 0.1356 0.1818 0.3478 5.3 2mur:A, 3wwq:C, 3wwq:F, 3wwq:I, 3wwq:L
16 7r81:N1 213 23 0.1356 0.0376 0.3478 5.7
17 7olc:LL 209 23 0.1356 0.0383 0.3478 5.9 8i9p:LL, 8i9r:LL, 8i9t:LL, 8i9v:LL, 8i9w:LL, 8i9x:LL, 8i9y:LL, 8i9z:LL, 8ia0:LL, 7old:LL, 8oo0:LL, 8pv1:LL, 8pv2:LL, 8pv3:LL, 8pv4:LL, 8pv5:LL, 8pv6:LL, 8pv7:LL, 8pv8:LL, 8pvk:LL, 8pvl:LL, 7z3n:LL, 7z3o:LL
18 6jyg:D 307 28 0.2034 0.0391 0.4286 7.7 6jyg:A, 6jyg:B, 6jyg:C, 6jyg:E, 6jyg:F
19 5vsu:A 387 24 0.1525 0.0233 0.3750 8.5 6aso:A, 2kh9:A, 4n0t:A, 5tf6:A, 5tf6:C
20 5aaq:A 57 24 0.1864 0.1930 0.4583 9.9 2mxp:A, 4xkl:B, 4xkl:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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