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BioLiP
>protein
VHKHTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEE

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7mex:A 1737 79 1.0000 0.0455 1.0000 2.40e-60 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
2 3ny1:A 73 71 0.4177 0.4521 0.4648 2.78e-14 3ny1:B, 5tdc:A, 5tdc:C
3 3ny2:D 73 74 0.4304 0.4658 0.4595 1.24e-10 3ny2:A, 3ny2:B, 3ny2:C, 3ny2:E, 3ny2:F, 3ny2:G, 3ny2:H, 3ny3:A, 5tda:A, 5tdb:A, 5tdd:A, 5um3:A
4 7wul:A 70 69 0.3165 0.3571 0.3623 1.21e-06 7wuk:A, 7wum:A, 7wun:A
5 7y70:A 77 58 0.3165 0.3247 0.4310 1.36e-06 6lhn:A, 7xwd:A, 7xwe:A, 7xwe:B, 7xwf:A, 7xwg:A, 7xwg:B, 7y6w:A, 7y6x:A, 7y6x:B, 7y6x:D, 7y6x:E, 7y6x:F, 7y6x:G, 7y6x:H, 7y6x:C, 7y6y:A, 7y6y:B, 7y6y:C, 7y6y:D, 7y6z:A
6 8g9t:M 263 17 0.1266 0.0380 0.5882 1.2
7 8g9s:B 283 17 0.1266 0.0353 0.5882 1.2 8g9s:C, 8g9s:D, 8g9s:E, 8g9s:F, 8g9s:G, 8g9s:M, 8g9t:B, 8g9t:C, 8g9t:D, 8g9t:E, 8g9u:A, 8g9u:B, 8g9u:D, 8g9u:C, 8g9u:E, 8g9u:F, 8g9u:M, 8gaf:A, 8gaf:B, 8gaf:C, 8gaf:D, 8gaf:E, 8gaf:F, 8gaf:M, 8gam:A, 8gam:B, 8gam:C, 8gam:D, 8gam:E, 8gam:F, 8gam:M, 8gan:A, 8gan:B, 8gan:C, 8gan:D, 8gan:E, 8gan:F, 8gan:M
8 6fk4:A 257 18 0.1013 0.0311 0.4444 2.5 6fk5:A, 6fke:A, 2jc4:A
9 4xi6:A 363 46 0.2025 0.0441 0.3478 3.4 4xi7:A, 4xib:A
10 4e6n:A 407 14 0.1139 0.0221 0.6429 3.8 4e6n:C, 3ty5:A, 3ty5:B, 3ty9:A, 3ty9:B, 3ty9:C, 3ty9:D
11 6dcr:B 600 35 0.1392 0.0183 0.3143 6.6
12 8fak:H 643 35 0.1392 0.0171 0.3143 6.6 2d7g:A, 2d7g:B, 2d7g:C, 2d7g:D, 2d7h:A, 6dcr:A, 2dwl:A, 2dwl:B, 2dwl:C, 2dwl:D, 2dwm:A, 2dwm:C, 2dwm:D, 2dwn:A, 2dwn:C
13 2d8l:A 363 28 0.1266 0.0275 0.3571 9.8 2gh4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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