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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS
GTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD
FDKVVVNRRLESACAELVSLLVG

The query sequence (length=183) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1zny:A 183 183 1.0000 1.0000 1.0000 1.69e-131 1znx:A, 1znz:A
2 1ex7:A 186 185 0.4153 0.4086 0.4108 1.53e-44 1gky:A
3 7s5e:D 207 180 0.3934 0.3478 0.4000 8.74e-42 7s5e:A, 7s5e:B, 7s5e:C, 7s5e:E, 7s5e:F, 7s5e:G, 7s5e:H, 6wct:A, 6wct:B, 6wct:C, 6wct:D
4 8egl:C 203 180 0.3661 0.3300 0.3722 4.52e-41 8egl:A, 8egl:B, 8egl:D, 8egl:E, 8egl:F, 8egl:G, 8egl:H, 8egl:I, 8egl:J, 8egl:K, 8egl:L, 7u5f:A, 7u5f:B, 7u5f:C, 7u5f:D
5 3tr0:A 201 183 0.3825 0.3483 0.3825 2.23e-39
6 2anb:A 206 182 0.3552 0.3155 0.3571 1.54e-38 2an9:A, 2an9:B, 2f3r:A, 2f3r:B, 2f3t:A, 2f3t:B, 2f3t:E, 2f3t:F
7 6mfu:A 216 196 0.4317 0.3657 0.4031 2.98e-38 6mfu:B, 6mfu:C, 6mfu:D
8 1lvg:A 190 183 0.4317 0.4158 0.4317 6.29e-38
9 8pts:A 195 183 0.4153 0.3897 0.4153 4.88e-34 8pts:B
10 4qrh:B 186 173 0.3497 0.3441 0.3699 9.75e-30 2j41:B, 2j41:C, 2j41:D, 4qrh:C, 4qrh:D
11 2qor:A 196 184 0.3279 0.3061 0.3261 1.14e-29
12 3lnc:A 188 182 0.3333 0.3245 0.3352 1.53e-22 3lnc:B
13 7sqc:1C 1700 158 0.3279 0.0353 0.3797 8.19e-21 7sqc:1D
14 7sqc:1C 1700 188 0.3060 0.0329 0.2979 2.80e-08 7sqc:1D
15 7sqc:1C 1700 155 0.2350 0.0253 0.2774 0.038 7sqc:1D
16 7sqc:1C 1700 24 0.0601 0.0065 0.4583 7.7 7sqc:1D
17 7sqc:1A 1639 158 0.3115 0.0348 0.3608 1.47e-16
18 7sqc:1A 1639 188 0.3060 0.0342 0.2979 3.16e-08
19 7sqc:1A 1639 24 0.0601 0.0067 0.4583 7.6
20 4wsi:A 372 184 0.2951 0.1452 0.2935 1.60e-14 7m4r:A, 7ntj:B, 7ntj:A, 7ntk:A, 7ntk:D, 7ntk:B, 7ntk:F, 7qcs:A, 7qcs:B, 4uu5:A, 4wsi:B
21 7sqc:1B 1660 157 0.2787 0.0307 0.3248 1.49e-10
22 7sqc:1B 1660 184 0.2951 0.0325 0.2935 7.95e-10
23 7sqc:1B 1660 155 0.2350 0.0259 0.2774 0.045
24 7sqc:1B 1660 23 0.0601 0.0066 0.4783 8.0
25 3uat:A 276 129 0.2022 0.1341 0.2868 4.26e-07
26 5ypr:A 267 98 0.1475 0.1011 0.2755 1.53e-06 7f7g:A, 7f7g:B, 7f7i:A, 7f7i:D, 7f7i:B, 7f7i:C, 7f7i:E, 7f7i:F, 5gnv:A, 1jxm:A, 3wp0:A, 3wp1:B, 5ypo:B, 5ypo:A
27 3tvt:A 255 94 0.1530 0.1098 0.2979 2.77e-04
28 7ykg:A 188 43 0.1148 0.1117 0.4884 0.004 7ykf:A, 7ykf:C, 7ykg:C, 7ykh:A, 7ykh:C, 7yki:A, 7yki:C
29 1grq:A 178 39 0.0874 0.0899 0.4103 0.020 1grr:A, 1qhn:A, 1qhs:A, 1qhx:A, 1qhy:A
30 3c41:J 242 22 0.0765 0.0579 0.6364 0.089 3c41:K, 3c4j:A, 3c4j:B, 2olj:A, 2olj:B, 2olk:A, 2olk:B, 2olk:C, 2olk:D, 2q0h:A, 2q0h:B
31 4ymu:J 240 22 0.0710 0.0542 0.5909 0.096 4ymu:A, 4ymv:J, 4ymv:A
32 9iuk:A 1335 163 0.2350 0.0322 0.2638 0.43 9iul:A, 9ium:A
33 4v8p:BB 386 28 0.0820 0.0389 0.5357 0.50 4v8p:CB, 4v8p:EB, 4v8p:GB
34 7ch6:C 265 125 0.1475 0.1019 0.2160 0.52 7cgn:B, 7cgn:E, 7ch0:B, 7ch0:E, 7ch6:D, 6xgy:A, 6zy4:F, 6zy4:G, 6zy9:F, 6zy9:G
35 7mq8:SI 844 19 0.0656 0.0142 0.6316 0.93 7mq9:SI
36 7mqa:SI 803 19 0.0656 0.0149 0.6316 0.96
37 2h92:A 216 66 0.0929 0.0787 0.2576 1.2 2h92:B, 2h92:C
38 6p6j:A 571 21 0.0710 0.0228 0.6190 1.2 8vsi:A
39 8dqw:A 522 43 0.0820 0.0287 0.3488 1.3 8fs3:A, 8fs5:A, 8fs6:A, 8fs7:A, 8fs8:A, 7sgz:A, 7st9:A, 7stb:A
40 8ipr:C 515 21 0.0656 0.0233 0.5714 1.5 8ipr:E
41 8i9x:LB 356 45 0.0929 0.0478 0.3778 1.7 8i9r:LB, 8i9t:LB, 8i9v:LB, 8i9w:LB, 8i9y:LB, 8i9z:LB, 8ia0:LB
42 8pv1:LB 389 45 0.0929 0.0437 0.3778 1.7 7olc:LB, 7old:LB, 8oo0:LB, 8pv2:LB, 8pv3:LB, 8pv4:LB, 8pv5:LB, 8pv6:LB, 8pv7:LB, 8pv8:LB, 8pvk:LB, 8pvl:LB, 7r81:E1, 7z3n:LB, 7z3o:LB
43 5wp9:A 590 63 0.1093 0.0339 0.3175 1.8 8skn:A, 8skn:B, 3w6n:A, 3w6n:B, 3w6o:A, 3w6o:B, 3w6p:A, 3w6p:B, 5wp9:C, 5wp9:E, 5wp9:G, 5wp9:I, 5wp9:K, 5wp9:M, 5wp9:O
44 1ay4:A 394 64 0.1202 0.0558 0.3438 1.9 1ay4:B, 1ay5:A, 1ay5:B, 1ay8:A, 1ay8:B, 2ay1:A, 2ay1:B, 2ay2:A, 2ay2:B, 2ay3:A, 2ay3:B, 2ay4:A, 2ay4:B, 2ay5:A, 2ay5:B, 2ay6:A, 2ay6:B, 2ay7:A, 2ay7:B, 2ay8:A, 2ay8:B, 2ay9:A, 2ay9:B
45 6zhm:A 269 54 0.1148 0.0781 0.3889 2.0 6zhl:A, 6zjo:A, 6zjo:B
46 2gj8:D 172 78 0.1202 0.1279 0.2821 2.1 2gj8:A, 2gj8:B, 2gj8:C, 2gj9:A, 2gj9:B, 2gj9:C, 2gj9:D, 2gja:A, 2gja:B
47 5tmb:A 451 139 0.2022 0.0820 0.2662 2.1 6bk0:A, 6bk1:A, 6bk2:A, 6bk3:A, 5tmd:A, 5tme:A
48 7cha:I 262 132 0.1639 0.1145 0.2273 2.2 7ch8:I, 7ch8:J, 7cha:J
49 4l16:A 292 33 0.0601 0.0377 0.3333 2.8
50 5l22:B 540 123 0.1749 0.0593 0.2602 3.0 5l22:A
51 7ste:A 468 20 0.0601 0.0235 0.5500 3.7 8fs4:A, 7sh2:A
52 7p06:A 1350 25 0.0601 0.0081 0.4400 4.1
53 7p04:A 1353 25 0.0601 0.0081 0.4400 4.1 7p05:A
54 8fkt:LN 358 46 0.0874 0.0447 0.3478 4.4 8fku:LN, 8fkv:LN, 8fkw:LN, 8fkx:LN, 8fky:LN, 8fkz:LN, 8fl0:LN
55 5fl3:A 354 34 0.0656 0.0339 0.3529 4.7
56 3zth:A 347 36 0.0710 0.0375 0.3611 5.7 3zth:B
57 7f5s:LB 402 46 0.0874 0.0398 0.3478 5.8 7a01:52, 8a3d:E, 5aj0:AB, 8b5l:B, 8b6c:B, 9bdl:AL03, 9bdn:AL03, 9bdp:AL03, 7bhp:LB, 8bhf:k3, 8bpo:B2, 8btk:BB, 7cpu:LB, 7cpv:LB, 4d5y:B, 4d67:B, 6d90:B, 6d9j:B, 9f1b:BB, 9f1c:BB, 9f1d:BB, 8fkp:LN, 8fkq:LN, 8fkr:LN, 8fks:LN, 8fl2:LN, 8fl3:LN, 8fl4:LN, 8fl6:LN, 8fl7:LN, 8fl9:LN, 8fla:LN, 8flb:LN, 8flc:LN, 8fld:LN, 8fle:LN, 8flf:LN, 6frk:B, 6ftg:B, 6fti:B, 6ftj:B, 8g5y:LB, 8g5z:LB, 8g60:LB, 8g61:LB, 8g6j:LB, 8glp:LB, 6gz3:AB, 6gz4:AB, 6gz5:AB, 6hcf:B3, 6hcj:B3, 6hcm:B3, 6hcq:B3, 8idt:B, 8idy:B, 8ie3:B, 8ifd:1E, 8ife:1E, 8ine:B, 8inf:B, 8ink:B, 6ip5:1E, 6ip6:1E, 6ip8:1E, 8ipd:B, 8ipx:B, 8ipy:B, 8ir1:B, 8ir3:B, 3j7o:B, 3j7p:B, 3j7q:B, 3j7r:B, 3j92:B, 3jag:B, 3jah:B, 3jai:B, 3jaj:B, 3jan:B, 8jdj:H, 8jdk:H, 8jdl:H, 8jdm:H, 8k2c:LB, 5lks:LB, 6lqm:B, 6lsr:B, 6lss:B, 7ls1:E2, 7ls2:E2, 6lu8:B, 5lzs:B, 5lzt:B, 5lzu:B, 5lzv:B, 5lzw:B, 5lzx:B, 5lzy:B, 5lzz:B, 7mdz:B, 6mtb:B, 6mtc:B, 6mtd:B, 6mte:B, 7nfx:B, 7nwg:B3, 7nwh:B, 7nwi:B, 7o7y:BB, 7o7z:BB, 7o80:BB, 7o81:BB, 7obr:B, 8ohd:LB, 8oj0:LB, 8oj5:LB, 8oj8:LB, 6ole:B, 6olf:B, 6olg:AB, 6oli:B, 6olz:AB, 6om0:B, 6om7:B, 7ow7:E, 7oya:B1, 7oyb:B1, 7oyc:B1, 7oyd:B, 8p2k:BB, 6p5i:AB, 6p5j:AB, 6p5k:AB, 6p5n:AB, 8q7z:BB, 8q87:BB, 8qfd:B, 7qgg:B, 8qoi:LB, 7qvp:LB, 7qvp:MB, 7qwq:B, 7qwr:B, 7qws:B, 6qzp:LB, 6r5q:B, 6r6g:B, 6r6p:B, 6r7q:B, 8rjb:w, 8rjc:w, 8rjd:w, 8scb:B, 6sgc:B2, 6swa:B, 5t2c:E, 6t59:B3, 7tm3:w, 7toq:AL03, 7tor:AL03, 7tut:w, 7ucj:B, 7uck:B, 4ug0:LB, 4ujc:BB, 4ujd:AB, 4uje:CB, 4v5z:Bb, 4v6x:CB, 6w6l:B, 6xa1:LB, 7xnx:LB, 7xny:LB, 8xsx:LB, 8xsy:LB, 8xsz:LB, 6y0g:LB, 8y0w:LB, 8y0x:LB, 6y2l:LB, 6y57:LB, 6y6x:LB, 8yoo:LB, 8yop:LB, 6z6l:LB, 6z6m:LB, 6z6n:LB, 7zjw:LE, 7zjx:LE, 6zm7:LB, 6zme:LB, 6zmi:LB, 6zmo:LB, 6zvk:52
58 2ocp:A 229 58 0.0984 0.0786 0.3103 5.9 2ocp:B, 2ocp:C, 2ocp:D, 2ocp:E, 2ocp:F, 2ocp:G, 2ocp:H
59 6sc2:B 3930 37 0.0820 0.0038 0.4054 6.1 6rla:A, 6rla:B, 6sc2:A
60 8jxu:A 1410 115 0.1475 0.0191 0.2348 6.2 8jxq:A
61 4rh7:A 3005 37 0.0820 0.0050 0.4054 6.4
62 5oql:Z 639 23 0.0601 0.0172 0.4783 6.8
63 7dnz:A 591 21 0.0601 0.0186 0.5238 7.1 7dny:A, 7dny:B, 7dnz:B, 7ekl:A, 7ekl:B, 8k7b:A, 8k7b:B, 8k7c:A, 8k7c:B, 3nh9:A, 3nha:A, 3nhb:A, 8yr3:A, 8yr3:B, 8yr4:B, 8yr4:A
64 1in5:A 301 155 0.1913 0.1163 0.2258 7.5 1in4:A, 1in6:A, 1in7:A, 1in8:A, 1j7k:A
65 6rxt:CI 822 23 0.0601 0.0134 0.4783 7.6 6rxu:CI, 6rxv:CI, 6rxx:CI, 6rxy:CI, 6rxz:CI
66 7v5c:A 572 26 0.0656 0.0210 0.4615 8.4 7v5c:B, 7vfi:A, 7vfi:B
67 3bk7:A 593 29 0.0765 0.0236 0.4828 8.9 3j15:B, 5lw7:B, 1yqt:A, 5yv5:A
68 6zu5:LP0 153 43 0.0601 0.0719 0.2558 9.3
69 4f0p:B 452 32 0.0656 0.0265 0.3750 9.8 4f0p:A, 4f0q:A, 4f0q:B, 4f0q:C, 4r28:C
70 7yq0:A 173 31 0.0492 0.0520 0.2903 9.9 7yq0:B, 7yq1:A, 7yq1:B, 7yq1:C, 7yq1:D, 7yq1:E, 7yq1:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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