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BioLiP
>protein
VGNHTAKWMQDRSKKSPMELISEVPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHH

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bed:R 73 73 1.0000 1.0000 1.0000 7.13e-52 7a23:P, 7a24:P, 7aqr:R, 7ar7:R, 7ar8:R, 7arb:R, 8bpx:R, 8bq5:R, 8bq6:R, 8e73:S6, 6x89:S6
2 7arc:R 108 72 0.5205 0.3519 0.5278 8.47e-20 7ard:R
3 8gym:s6 92 60 0.3836 0.3043 0.4667 3.56e-11 8b6f:BR, 8bqs:BR, 8gym:S6, 7tgh:S6
4 8q0a:R 96 58 0.3288 0.2500 0.4138 7.87e-10 7dgq:I, 7dgr:I, 7dgs:I, 7dgz:I, 7dh0:I, 7dkf:I2, 5lnk:b, 5o31:R, 8q0f:R, 8q0j:R, 8q0m:R, 8q0o:R, 8q0q:R, 8q1p:R, 8q1u:R, 8q1y:R, 8q25:R, 8q45:R, 8q46:R, 8q47:R, 8q48:R, 8q49:R, 8q4a:R, 6q9d:S6, 6qa9:S6, 6qbx:S6, 6qc2:S6, 6qc3:S6, 6qc4:S6, 6qc5:S6, 6qc6:S6, 6qc7:S6, 6qc8:S6, 7qsd:R, 7qsk:R, 7qsl:R, 7qsm:R, 7qsn:R, 7qso:R, 7r41:R, 7r42:R, 7r43:R, 7r44:R, 7r45:R, 7r46:R, 7r47:R, 7r48:R, 7r4c:R, 7r4d:R, 7r4f:R, 7r4g:R, 8ud1:1R, 8ueo:1R, 8uep:1R, 8ueq:1R, 8uer:1R, 8ues:1R, 8uet:1R, 8ueu:1R, 8uev:1R, 8uew:1R, 8uex:1R, 8uey:1R, 8uez:1R, 8ugh:1R, 8ugi:1R, 8ugj:1R, 8ugn:1R, 8ugn:5R, 8ugr:1R, 8ugr:5R, 7v2c:T, 7v2d:T, 7v2e:T, 7v2f:T, 7v2h:T, 7v2k:T, 7v2r:T, 7v30:T, 7v31:T, 7v32:T, 7v33:T, 7v3m:T, 7vb7:T, 7vbn:T, 7vbz:T, 7vwj:T, 7vxp:T, 7vxu:T, 7vy8:T, 7vya:T, 7vyf:T, 7vyh:T, 7vyn:T, 7vz1:T, 7vzv:T, 7vzw:T, 7w00:T, 7w0h:T, 7w0r:T, 7w0y:T, 7w1o:T, 7w1p:T, 7w1t:T, 7w1u:T, 7w1v:T, 7w1z:T, 7w20:T, 7w2k:T, 7w2l:T, 7w2r:T, 7w2u:T, 7w2y:T, 7w31:T, 7w32:T, 7w35:T, 7w4c:T, 7w4d:T, 7w4e:T, 7w4f:T, 7w4g:T, 7w4j:T, 7w4k:T, 7w4l:T, 7w4m:T, 7w4n:T, 7w4q:T, 7zd6:b, 7zdh:b, 7zdj:b, 7zdm:b, 7zdp:b, 7zeb:b, 6zk9:b, 6zkc:b, 6zkd:b, 6zke:b, 6zkf:b, 6zkg:b, 6zkh:b, 6zki:b, 6zkj:b, 6zkk:b, 6zkl:b, 6zkm:b, 6zkn:b, 6zko:b, 6zkp:b, 6zkq:b, 6zkr:b, 6zks:b, 6zkt:b, 6zku:b, 6zkv:b
5 8esw:S6 90 53 0.3562 0.2889 0.4906 9.36e-10 8b9z:R, 8ba0:R, 8esz:S6
6 7b93:R 96 68 0.3836 0.2917 0.4118 2.99e-09 7ak5:R, 7ak6:R, 8c2s:R, 8ca3:R, 6g2j:R, 6g72:R, 8iao:R, 8iap:R, 8ib4:R, 8ib5:R, 8ib9:R, 8iba:R, 8ibd:R, 8ibe:R, 8ic2:R, 8ic3:R, 8olt:R, 8om1:R, 7psa:R, 8pw5:7, 8pw6:7, 8pw7:7, 8rgp:7, 8rgq:7, 8rgr:7, 8rgt:7, 6zr2:R, 6ztq:R
7 7b0n:R 118 78 0.3699 0.2288 0.3462 3.43e-07 6gcs:M, 7o6y:M, 7o71:M, 6rfr:M, 6rfs:M, 6y79:M, 6yj4:R
8 7zm7:M 118 56 0.3151 0.1949 0.4107 4.90e-04 7zmb:M, 7zmg:M
9 8qby:R 59 39 0.2055 0.2542 0.3846 0.012
10 2apg:A 517 48 0.1781 0.0251 0.2708 0.66 2aqj:A, 2ar8:A, 2ard:A, 2jkc:A, 4z43:A, 4z44:A
11 8iuf:S6 147 58 0.2329 0.1156 0.2931 1.2 8j9h:S6, 8j9i:S6, 8j9j:S6
12 2jz8:A 87 45 0.2055 0.1724 0.3333 1.7
13 8dh6:d 121 39 0.2192 0.1322 0.4103 1.8 6hu9:d, 6hu9:p, 6t0b:d, 6t0b:q, 6t15:d, 6ymx:d, 6ymy:d, 7z10:d
14 2avd:A 219 21 0.1507 0.0502 0.5238 3.0 2avd:B
15 7qa8:B 299 17 0.1096 0.0268 0.4706 3.7 7ad3:B, 7ad3:A, 7qa8:A, 7qb9:A, 7qb9:B, 7qbc:A, 7qbc:B, 7qbi:A, 7qbi:B
16 4dpv:Z 559 38 0.1781 0.0233 0.3421 6.2 1c8d:A, 1c8f:A, 1c8g:A, 1ijs:P, 1p5w:A, 4qyk:K, 4qyk:V, 4qyk:E, 4qyk:J, 4qyk:S, 4qyk:B, 4qyk:c, 4qyk:W, 4qyk:H, 4qyk:I, 4qyk:T, 4qyk:L, 4qyk:M, 4qyk:C, 4qyk:R, 4qyk:A, 4qyk:b, 4qyk:Y, 4qyk:d, 4qyk:F
17 4me3:A 246 17 0.1096 0.0325 0.4706 7.2
18 5ndx:A 606 49 0.1781 0.0215 0.2653 8.3
19 7c7d:A 539 34 0.1644 0.0223 0.3529 9.8 7c7d:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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