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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VGLPYSELLSRFFNILRKFRIPPPVCLRDGKKTIFSNIQDIAEKLHRSPEHLIQYLFAELGTSGSVDGKRLVIKGKFQSK
QMENVLRRYILEYVTCKTCKSINTELKRENRLFFMVCKSCGSTRSVSS

The query sequence (length=128) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8s8h:l 134 134 1.0000 0.9552 0.9552 1.72e-89 8cas:s, 6fyx:l, 6fyy:l, 6gsm:l, 6gsn:l, 3jap:l, 8s8i:l
2 8pj1:s 159 138 0.5859 0.4717 0.5435 4.42e-44 7a09:4, 8oz0:U, 8ppl:Is, 7qp6:s, 6ybv:s, 6zmw:s, 6zp4:4
3 2d74:B 137 123 0.3359 0.3139 0.3496 1.25e-28 2dcu:B
4 2qmu:C 132 125 0.3438 0.3333 0.3520 1.46e-22 5jb3:8
5 1nee:A 135 125 0.2969 0.2815 0.3040 1.46e-22
6 7ase:n 225 140 0.3359 0.1911 0.3071 1.04e-13
7 8cas:m 147 112 0.2812 0.2449 0.3214 1.25e-12 6fyx:m, 6fyy:m, 8s8j:m, 6zu9:m
8 2e9h:A 157 97 0.2188 0.1783 0.2887 1.82e-10 8oz0:H, 8pj2:z, 8pj3:z
9 1k81:A 36 33 0.0781 0.2778 0.3030 0.093
10 7bhp:A 322 51 0.1484 0.0590 0.3725 1.3
11 4hca:A 99 38 0.0938 0.1212 0.3158 3.6 4hc7:B
12 6uss:A 485 35 0.1016 0.0268 0.3714 4.0 6uss:B
13 6m5x:O 334 66 0.1641 0.0629 0.3182 4.2 6m5x:R, 6m5x:P, 6m5x:Q
14 7pfo:B 759 53 0.1250 0.0211 0.3019 4.5 7plo:B, 5vbn:B, 5vbn:F
15 4c91:A 811 68 0.1562 0.0247 0.2941 4.7
16 2m9w:A 63 28 0.0781 0.1587 0.3571 6.7 8vg0:T, 8vg1:T
17 3pmq:A 593 77 0.1484 0.0320 0.2468 6.9
18 2j3i:B 345 46 0.1094 0.0406 0.3043 7.4 2j3i:A, 2j3j:A, 2j3j:B, 2j3k:A, 2j3k:B
19 8gz2:B 1174 32 0.0938 0.0102 0.3750 7.8 8gz1:B
20 8fhd:A 1294 32 0.0938 0.0093 0.3750 8.2
21 2hk6:A 309 58 0.1328 0.0550 0.2931 8.7 1c1h:A, 1c9e:A, 1ld3:A, 3m4z:A, 2q2n:A, 2q2o:A, 2q3j:A
22 3kmv:E 140 63 0.1562 0.1429 0.3175 9.7 3kmv:A, 3kmv:B, 3kmv:C, 3kmv:D, 3kmv:F, 3kmv:G, 3kmv:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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