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BioLiP
>protein
VGERFTHDFVVPPHKTVRHLYPESPEFAEAPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTV
TVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3p3i:A 135 130 0.9924 0.9630 1.0000 1.18e-93 3kuv:B, 3kuv:A, 3kuw:B, 3kuw:A, 3kv7:B, 3kv7:A, 3kv8:A, 3kv8:B, 3kvi:B, 3kvi:A, 3kvu:A, 3kvu:B, 3kvu:C, 3kvu:D, 3kvz:A, 3kvz:B, 3kvz:E, 3kvz:F, 3kw1:C, 3kw1:D, 3kw1:E, 3kw1:F, 3p2r:A, 3p2r:B, 3p3i:B, 3p3i:C, 3p3i:D
2 8tri:C 419 28 0.0916 0.0286 0.4286 3.1
3 8tri:B 454 28 0.0916 0.0264 0.4286 3.4 7suu:A, 7suu:B, 8tri:A
4 7zc6:G 187 37 0.0763 0.0535 0.2703 5.2
5 4lxc:A 246 32 0.0916 0.0488 0.3750 7.0 5leo:B, 5leo:A, 4lxc:B, 4lxc:C, 4lxc:D, 5nmy:A, 4qp5:A, 4qp5:B, 4qpb:A, 4qpb:B, 6rje:A, 6rk4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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