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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VGALPIHWGAPTASERGPVVGTTTNRAHRNVIGTHSGSYSIYRALAVASGALSRHHKADLTDTAPTNIIGPYPQWSQPGK
IVSLDPWGATVAEVFAAELAAGHDIRPSIAVTKAHVILPEVMEAIQKGRLHPDGRFLLPSGAALVTKAAIEPVWHLPGVA
ERFHCSETDLRRVLFEETGGMYPELVTRSDLEVFLPPIGGQTVYIFGDARDLADPGVELTARVHDECNGSDVFGSDICTC
RPYLTHAIEECIQGAQRGGVGLVAYSRKEGRALGEVTKFLVYNARKRQVGGDTADQYFARTECVAGVQDMRFQEMMPDVL
HWLGVRKIHRLVSMSNMKYDAITGSGIEVVERVDLPADLIPADARVEIDAKMAAGYFTPGAVPDADELAKVKGRELD

The query sequence (length=397) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ej3:B 401 397 1.0000 0.9900 1.0000 0.0 7eev:A, 7eev:B, 7ej3:A
2 2bz0:B 173 135 0.1058 0.2428 0.3111 1.53e-08 2bz0:A, 2bz1:A
3 4i14:A 325 57 0.0579 0.0708 0.4035 0.003 4i14:B, 3mio:A, 3mio:B
4 5o6c:A 252 57 0.0378 0.0595 0.2632 0.92 6t7f:A
5 1y44:A 269 36 0.0302 0.0446 0.3333 3.4
6 2fk6:A 307 34 0.0302 0.0391 0.3529 3.9 4gcw:A
7 4h1v:A 358 46 0.0403 0.0447 0.3478 6.9
8 6kms:C 210 58 0.0378 0.0714 0.2586 7.7 8cnc:A, 6h1d:A, 6h1e:A, 6k0x:A, 6khs:A, 6kmr:B, 6kms:D, 6ped:A, 8qdg:A, 8qdi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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