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BioLiP
>protein
VFYAFVLVMKPRQRRFTSQALREIAVAIYNNGGLIRKLSNEGVMRPYSRFRDADNTPLTYARYVTLQVDMGEEQMRKVEK
IMKEHQDVFITLNLNNLERPVGIRYFPLDTFTRLEEEINWPPQTSADIYKQLEMNWKEFSRTRWSNFLRN

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aor:b 150 150 1.0000 1.0000 1.0000 7.97e-111
2 6hiv:CF 159 159 0.8467 0.7987 0.7987 1.96e-94 6hiw:CF, 6hiy:CF, 7pua:CF, 7pub:CF, 6sga:CF, 6sgb:CF
3 1qax:A 425 74 0.1467 0.0518 0.2973 0.20 8gdn:A, 8gdn:B, 4i4b:A, 4i4b:B, 4i56:A, 4i56:B, 4i6a:A, 4i6a:B, 4i6w:A, 4i6w:B, 4i6y:A, 4i6y:B, 1qax:B, 1qay:A, 1qay:B, 1r31:A, 1r31:B, 8sz6:A, 8sz6:B, 1t02:A, 8vlq:A, 8vlq:B
4 6a91:A 1323 92 0.1333 0.0151 0.2174 0.21 6a95:A, 6nt3:A, 6nt4:A
5 8isk:B 848 38 0.0933 0.0165 0.3684 1.8 8isk:A
6 6z1p:Bg 136 83 0.1133 0.1250 0.2048 2.8
7 4a80:A 159 67 0.1333 0.1258 0.2985 4.1 4a81:A, 4a83:A, 4a84:A, 4a85:A, 4a86:A, 4a87:A, 4a8g:A, 4a8v:A, 1fm4:A, 4mns:A, 4qip:A
8 3k6b:A 217 64 0.1067 0.0737 0.2500 4.2
9 1uf2:A 967 43 0.1000 0.0155 0.3488 4.4
10 7pnt:M 126 76 0.1267 0.1508 0.2500 5.4 7a5f:M6, 7a5g:M6, 7a5i:M6, 7a5k:M6, 5aj3:P, 5aj4:AP, 8any:AM, 8csp:M, 8csq:M, 8csr:M, 8css:M, 8cst:M, 8csu:M, 6gaw:AP, 6gaz:AP, 3j9m:AM, 3jd5:P, 8k2a:SP, 7l08:AM, 6neq:P, 6nf8:P, 7nqh:AP, 7nql:AP, 7nsi:AP, 7nsj:AP, 6nu2:AM, 6nu3:AM, 7og4:AM, 8oin:AM, 8oip:AM, 8oir:AM, 8ois:AM, 7p2e:M, 7pnu:M, 7pnv:M, 7pnw:M, 7pnx:M, 7pny:M, 7pnz:M, 7po0:M, 7po1:M, 7po2:M, 7po3:M, 7qi4:AM, 7qi5:AM, 7qi6:AM, 8qrk:M, 8qrl:M, 8qrm:M, 8qrn:M, 6rw4:M, 6rw5:M, 6vlz:AM, 6vmi:AM, 8xt0:SP, 8xt2:SP, 6ydp:AP, 6ydw:AP, 6zm5:AM, 6zm6:AM, 6zs9:AM, 6zsa:AM, 6zsb:AM, 6zsc:AM, 6zsd:AM, 6zse:AM, 6zsg:AM
11 2w5b:A 271 81 0.1467 0.0812 0.2716 9.0 4a4x:A, 4afe:A, 2jav:A, 5m51:A, 5m53:A, 5m57:A, 6sgi:A, 2w5a:A, 2xk4:A, 2xkd:A, 2xkf:A, 2xnm:A, 2xnn:A, 2xnp:A
12 2xno:A 251 81 0.1467 0.0876 0.2716 9.5 5m55:A, 6sgd:A, 6sgh:A, 6sgk:A, 6sk9:A, 2wqo:A, 2xk3:A, 2xk6:A, 2xk7:A, 2xk8:A, 2xkc:A, 2xke:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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