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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VFLCPGLLKGVYQSEHLFESDHQSGAWCKDPLQASDKIYYMPWTPYRTDTLTEYSSKDDFIAGRPTTTYKLPHRVDGTGF
VVYDGALFFNKERTRNIVKFDLRTRIKSGEAIIANANYHDTSPYRWGGKSDIDLAVDENGLWVIYATEQNNGKIVISQLN
PYTLRIEGTWDTAYDKRSASNAFMICGILYVVKSVGNKIDYIYNTDQSKDSLVDVPFPNSYQYIAAVDYNPRDNLLYVWN
NYHVVKYSLDFGPL

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ftt:G 368 263 1.0000 0.6902 0.9658 0.0 5afb:A, 5cmn:E, 5cmn:F, 5cmn:G, 5cmn:H, 5ftt:C, 5ftt:D, 5ftt:H, 5ftu:C, 5ftu:D, 5ftu:G, 5ftu:H, 5ftu:K, 5ftu:L, 4rmk:A, 4rml:A, 4yeb:A
2 6ska:D 347 251 0.7205 0.5274 0.7291 8.07e-143 2jxa:A
3 6qm3:A 268 251 0.4291 0.4067 0.4343 7.17e-66 6qhj:A, 6qm3:B, 4xat:A
4 6ou1:A 260 238 0.3898 0.3808 0.4160 5.27e-62 8frr:A, 6ou1:B, 7sib:A, 7sij:A, 7sjt:A, 7sju:A, 7sjv:A, 7sjw:A, 7skd:A, 7ske:A, 7skf:A, 7skg:A, 7t8d:A, 4wxq:A, 4wxs:A, 4wxu:A
5 6nax:A 259 237 0.3740 0.3668 0.4008 7.81e-60 6nax:B
6 3vyw:D 306 54 0.0866 0.0719 0.4074 0.37 3vyw:A, 3vyw:B, 3vyw:C
7 3hxg:A 183 92 0.0906 0.1257 0.2500 0.77 3hxi:A
8 1wb7:A 205 94 0.1181 0.1463 0.3191 2.0 1wb7:B, 1wb8:A, 1wb8:B
9 3ano:B 175 49 0.0669 0.0971 0.3469 2.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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