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BioLiP
>protein
VFKKVLLTGTSEESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGAVEERTYQTEVQVAFELD

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2cc8:A 64 64 1.0000 1.0000 1.0000 1.01e-39 4b2h:A, 2ccb:A, 2cie:A, 2vkf:A, 2vx9:A
2 2vxa:A 66 64 0.3906 0.3788 0.3906 1.13e-07 2vxa:E, 2vxa:K, 2vxa:C, 2vxa:G, 2vxa:D, 2vxa:I, 2vxa:L, 2vxa:F, 2vxa:B, 2vxa:H, 2vxa:J
3 2cz8:D 68 64 0.4219 0.3971 0.4219 2.63e-04 2cz8:A, 2cz8:C, 2cz8:B, 2cz8:E, 2cz8:G, 2cz8:F, 2cz8:H, 2ux9:A, 2ux9:C, 2ux9:E, 2ux9:B, 2ux9:D, 2ux9:F, 2v18:A, 2v18:B, 2v18:H, 2v18:C, 2v18:F, 2v18:G, 2v18:J, 2v18:E, 2v18:D, 2v18:K, 2v18:I, 2v18:L, 2v19:A, 2v19:I, 2v19:E, 2v19:B, 2v19:F, 2v19:C, 2v19:K, 2v19:G, 2v19:D, 2v19:H, 2v19:J, 2v19:L, 2v21:A, 2v21:B, 2v21:C, 2v21:D, 2v21:F, 2vyx:A, 2vyx:B, 2vyx:L, 2vyx:G, 2vyx:H, 2vyx:C, 2vyx:F, 2vyx:E, 2vyx:J, 2vyx:D, 2vyx:I, 2vyx:K
4 5olu:A 310 48 0.2344 0.0484 0.3125 0.17
5 6r1e:A 70 58 0.2969 0.2714 0.3276 0.41 6r1e:C, 6r1e:D, 6r1e:B
6 2yiz:A 68 65 0.2812 0.2647 0.2769 0.98 2yiz:D, 2yiz:B, 2yiz:C, 2yj0:A, 2yj0:B, 2yj0:D, 2yj0:C, 2yj0:E, 2yj0:F
7 5izd:A 494 30 0.1875 0.0243 0.4000 2.3 5izd:B, 5izd:C, 5izd:D, 5izd:G, 5izd:H
8 7y85:D 652 41 0.1875 0.0184 0.2927 3.0 7xc7:D, 7y83:D
9 8d9g:A 679 41 0.1875 0.0177 0.2927 3.0 7xss:C, 7xt4:C
10 6khm:K 312 57 0.2031 0.0417 0.2281 4.4 6khl:A, 6khl:B, 6khm:A, 6khm:B, 6khm:C, 6khm:D, 6khm:E, 6khm:F, 6khm:G, 6khm:H, 6khm:I, 6khm:J, 6khm:L, 6khm:M, 6khm:N, 6khm:O, 6khm:P, 6khm:Q, 6khm:R, 6khm:S, 6khm:T, 6khm:U, 6khm:V, 6khm:X, 6khm:Y, 6khm:W, 6khm:Z
11 8aw0:A 320 33 0.1875 0.0375 0.3636 4.5 8avz:A, 8avz:C, 8avz:B, 8avz:D, 8aw0:F, 8aw0:B, 8aw0:D, 8aw0:C, 8aw0:H, 8aw0:E
12 5c0q:B 457 59 0.2812 0.0394 0.3051 6.5 5c0q:A, 5c0q:C, 5c0q:D
13 7xre:C 363 33 0.1719 0.0303 0.3333 8.5 7xr9:A, 7xr9:B, 7xr9:C, 7xr9:D, 7xr9:E, 7xr9:F, 7xre:A, 7xre:B, 7xre:D, 7xre:E, 7xre:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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