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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VFIRSAINRVHQNSAANGGELPRIVFPEGTSTKVLKALATLVEEKICQPILLGYPERVKEKIKALDIPLLNDVSIVHPSS
HPKYFSFVEKLYSLRQRKGINLGEAERLMADPNYFAAMMVNQGEADGMVSGSSINYADAVRPILQTIGVYKEGIPAGLNF
VLLEDKFLVLADTTVNLNPTAEQCAQIALQAAKIVEYFGIEPRVAMLSYSNFSGAEGTPRKMKKAAEIARSLRPDLMIEG
DMQADTAVNPEIMERLFPFSGLKGGANVLVFPNLESSNIAYKLIQQIGKAEVIGPFLTGVRRSANVLQRTTTVDGIVNSV
VFTALEAQYIKEVLKS

The query sequence (length=336) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6zng:F 753 336 1.0000 0.4462 1.0000 0.0 6zn4:A, 6zn4:B, 6zn7:A, 6zn7:B, 6zng:A, 6zng:B, 6zng:C, 6zng:D, 6zng:E, 6znt:A, 6znt:B, 6znt:C, 6znt:D, 6znt:F, 6znt:E, 6znu:A, 6znu:G, 6znu:B, 6znu:C, 6znu:D, 6znu:E
2 6iox:A 339 340 0.3690 0.3658 0.3647 5.59e-65 6iox:B
3 1xco:D 325 312 0.3363 0.3477 0.3622 4.12e-60 1xco:A, 1xco:B, 1xco:C, 1xco:E, 1xco:F
4 2af3:C 332 313 0.3185 0.3223 0.3419 1.81e-51 2af3:D, 2af4:C, 2af4:D
5 3u9e:B 288 140 0.1042 0.1215 0.2500 0.002 3u9e:A, 3uf6:A, 3uf6:B
6 5x3d:A 126 97 0.0833 0.2222 0.2887 0.50
7 5kqo:A 398 86 0.0685 0.0578 0.2674 0.94 5kqo:B, 5krr:A, 5krr:B, 5ks1:A, 5ks1:B
8 1svy:A 102 28 0.0327 0.1078 0.3929 2.6
9 1wyu:B 473 52 0.0536 0.0381 0.3462 4.3 1wyu:D, 1wyu:F, 1wyu:H, 1wyv:B, 1wyv:D, 1wyv:F, 1wyv:H
10 2i52:F 119 72 0.0625 0.1765 0.2917 4.5
11 4obv:C 471 79 0.0625 0.0446 0.2658 5.1 4obu:E, 4obu:A, 4obu:U, 4obu:G, 4obu:H, 4obu:F, 4obu:B, 4obu:C, 4obv:D, 4obv:B, 4obv:A
12 4rti:A 175 42 0.0565 0.1086 0.4524 5.2
13 1yw1:A 393 116 0.0804 0.0687 0.2328 5.9
14 8e4n:A 901 38 0.0446 0.0166 0.3947 6.0 9b6j:A, 9b6j:B, 9b6j:C, 9b6j:D, 8e4l:A, 8e4l:B, 8e4l:C, 8e4l:D, 8e4m:A, 8e4m:B, 8e4m:C, 8e4m:D, 8e4n:B, 8e4n:C, 8e4n:D, 8e4o:A, 8e4o:D, 8e4o:B, 8e4o:C, 8e4p:A, 8e4p:B, 8e4p:C, 8e4p:D
15 9b6h:B 934 38 0.0446 0.0161 0.3947 6.0 9b6d:A, 9b6d:B, 9b6d:C, 9b6d:D, 9b6e:B, 9b6e:A, 9b6e:C, 9b6e:D, 9b6f:A, 9b6f:B, 9b6f:C, 9b6f:D, 9b6g:A, 9b6g:B, 9b6g:C, 9b6g:D, 9b6h:A, 9b6h:C, 9b6h:D, 9b6k:A, 9b6k:B, 9b6k:C, 9b6k:D, 7wrb:A, 7wrb:B, 7wrb:C, 7wrb:D, 7wrc:A, 7wrc:B, 7wrc:C, 7wrc:D, 7wrd:A, 7wrd:B, 7wrd:C, 7wrd:D, 7wre:A, 7wre:B, 7wre:C, 7wre:D, 7wrf:A, 7wrf:B, 7wrf:C, 7wrf:D
16 4w8y:A 835 45 0.0476 0.0192 0.3556 6.6 4w8y:B
17 1xqa:A 112 38 0.0327 0.0982 0.2895 7.9 1xqa:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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