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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VFESELLLQRRLATTALKQPKELGYYSTNVGGELKVMDESNLSYYYLPDADIEKHIDLSAGARKFQDEQAEAEDDTGSLH
GLLQTLMEYERRKSKKVNADIIAFRGQVKRLIHCAFGGHATDVDMYVMSFDGQLFIRAARKKLEFPTSPRESWAYLAYYS
GYKFERMALLDRPVAETPREVLESRGKQVVRNGPQYKTVVRTGVGEHKLVLGAEVDGIFDFREPTGDNLKHYVELKVAKK
VQTLKDATNFEQKLFSVWLQCFLVGINRVIIGFRDEKFVLKSVEEFSTSEIPLLLKSTRNACVDAIKWYGALTKWLCELP
RGPEDDFKLYRLSCSRGALHLRQLHDEDLANGDDIIPGWFREWRRSLS

The query sequence (length=368) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5bte:B 368 368 1.0000 1.0000 1.0000 0.0 5bte:A
2 8k5p:O 346 361 0.4647 0.4942 0.4737 3.12e-111
3 5bud:A 391 391 0.4185 0.3939 0.3939 8.21e-83 5bud:B
4 5ulj:B 386 398 0.4049 0.3860 0.3744 9.04e-73 5ulj:A
5 3fqd:B 332 283 0.2364 0.2620 0.3074 1.68e-29 3fqg:A, 6wui:A
6 6wug:A 312 283 0.2337 0.2756 0.3039 5.22e-25
7 6aix:A 358 295 0.2065 0.2123 0.2576 2.21e-14 6aiy:A, 3fqi:A, 3fqj:A, 4j7l:A, 4j7m:A, 4j7n:A, 5uli:A, 6wre:A, 6wuf:A, 6wuk:A
8 1xxp:A 287 98 0.0707 0.0906 0.2653 0.14 3blt:A, 3blu:A, 3bm8:A, 6drb:A, 3f9a:A, 3f9b:A, 2i42:A, 1pa9:A, 1qz0:A, 1qz0:B, 3u96:A, 3u96:B, 1xxp:B, 1xxv:A, 1xxv:B, 2y2f:A, 2ydu:A, 1ytn:A, 1yts:A, 1ytw:A, 4z6b:A, 4zi4:A, 4zn5:A
9 3zby:B 404 85 0.0598 0.0545 0.2588 1.5 4tri:A, 4tri:B, 4uax:A, 2yoo:A, 2yoo:B, 2yoo:C, 2yoo:D, 3zby:A, 3zby:C, 3zby:D, 3zby:E, 3zby:F
10 6gka:A 178 53 0.0408 0.0843 0.2830 7.0 6gkb:A, 6gkc:A, 7pfb:A, 7pfg:A, 7pfh:A, 7pfi:A, 7pfj:A, 7pfk:A, 6son:A, 6soo:A, 6soq:A, 6sor:A
11 4gpu:A 331 196 0.1114 0.1239 0.2092 9.4
12 1llw:A 1475 114 0.0924 0.0231 0.2982 10.0 1llz:A, 1lm1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218