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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VEYTNTFKVAAVQAQPVWFDAAKTVDKTVSNIAEAARNGCELVAFPEVFIPGYPYHIWVDSPLAGMAKFAVRYHENSLTM
DSPHVQRLLDAARDHNIAVVVGISERDGGSLYMTQLIIDADGQLVARRRKLKPTHVERSVYGEGNGSDISVYDMPFARLG
ALNCWEHFQTLTKYAMYSMHEQVHVASWPGMSLYQPEVPAFGVDAQLTATRMYALEGQTFVVCTTQVVTPEAHEFFCENE
EQRKLIGRGGGFARIIGPDGRDLATPLAEDEEGILYADIDLSAITLAKQAADPVGHYSRPDVLSLNFNQRRTTPVNT

The query sequence (length=317) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8uxu:A 317 317 1.0000 1.0000 1.0000 0.0 8uxu:B, 8uxu:C, 8uxu:D, 8uxu:E, 8uxu:F, 8uxu:G, 8uxu:H, 8uxu:I, 8uxu:J, 8uxu:K, 8uxu:L, 8uxu:M, 8uxu:N
2 3klc:A 261 277 0.2208 0.2682 0.2527 2.80e-14 3klc:B
3 6ypa:B 269 168 0.1293 0.1524 0.2440 2.90e-09 7ovg:A, 7ovg:B, 6ypa:A, 6ypa:C, 6ypa:D
4 5h8i:C 301 239 0.1640 0.1728 0.2176 5.99e-04 5h8i:B, 5h8i:D, 5h8i:E, 5h8i:F, 5h8i:G, 5h8i:J, 5h8i:K, 5h8i:L, 5h8i:M, 5h8i:N, 5h8i:O, 5h8j:B, 5h8j:C, 5h8j:D, 5h8j:E, 5h8j:F, 5h8j:G, 5h8j:J, 5h8j:K, 5h8j:L, 5h8j:M, 5h8j:N, 5h8j:O, 5h8l:B, 5h8l:C, 5h8l:D, 5h8l:E, 5h8l:F, 5h8l:G, 5h8l:J, 5h8l:K, 5h8l:L, 5h8l:M, 5h8l:N, 5h8l:O
5 2e2l:A 317 136 0.1104 0.1104 0.2574 0.003 2e2l:C, 2e2l:F
6 4cyg:A 463 164 0.1136 0.0778 0.2195 0.029 4cyg:B, 7slv:A, 7slx:A, 7sly:A
7 8hpc:C 303 153 0.1136 0.1188 0.2353 0.029 8hpc:A, 8hpc:B, 8hpc:D, 8hpc:E, 8hpc:F, 8hpc:G, 8hpc:H, 1uf5:A, 1uf5:B, 1uf7:A, 1uf7:B, 1uf8:A, 1uf8:B
8 5k61:A 431 163 0.0978 0.0719 0.1902 0.089 5b62:A, 5k60:A, 5k62:A, 5k63:A, 5k66:A
9 5kha:A 526 49 0.0473 0.0285 0.3061 0.17 5kha:B
10 8ebc:C 355 92 0.0599 0.0535 0.2065 0.73 8ebc:A, 8ebc:B, 8ebc:D, 8ebc:F, 8ebc:E
11 4gyl:A 340 46 0.0536 0.0500 0.3696 3.1 4gyn:A, 4kzf:A
12 8wov:B 341 73 0.0694 0.0645 0.3014 3.9 8wop:A, 8wop:B, 8wov:A, 8wow:A, 8wow:B
13 8cg5:A 1282 25 0.0410 0.0101 0.5200 9.4 6fij:B
14 8cg6:A 1208 25 0.0410 0.0108 0.5200 9.4
15 4tvr:A 222 52 0.0442 0.0631 0.2692 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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