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BioLiP
>protein
VEYDVFLSFRGPDTRKQFTDFLYHFLCYYKIHTFRDDDELRKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAE
IVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKDDEQGAIADKVS
ADIWSHISKE

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vu8:B 170 170 1.0000 1.0000 1.0000 5.87e-127 7x5k:A, 7x5k:F, 7x5k:P, 7x5k:O, 7x5k:L, 7x5k:N, 7x5k:K, 7x5k:G, 7x5k:R, 7x5k:T, 7x5k:C, 7x5k:I, 7x5l:D, 7x5l:F, 7x5l:B, 7x5l:E, 7x5m:B, 7x5m:F
2 7s2z:B 173 159 0.4059 0.3988 0.4340 7.79e-38 6o0w:A, 7s2z:A, 7s2z:C, 7s2z:D
3 7crc:B 1112 165 0.3529 0.0540 0.3636 3.36e-26 7crc:A, 7crc:C, 7crc:D, 7xoz:A, 7xoz:B
4 5ti1:H 430 63 0.1294 0.0512 0.3492 1.7 5ti1:A, 5ti1:B, 5ti1:C, 5ti1:D, 5ti1:E, 5ti1:F, 5ti1:G
5 1tqy:A 421 38 0.0706 0.0285 0.3158 6.2 1tqy:C, 1tqy:E, 1tqy:G
6 5xvn:D 259 17 0.0529 0.0347 0.5294 8.3
7 5xvn:B 288 17 0.0529 0.0312 0.5294 9.9 5xvn:A, 5xvn:C, 5xvn:I, 5xvn:J, 5xvn:K, 5xvn:L, 5xvo:A, 5xvo:B, 5xvo:C, 5xvo:I, 5xvo:J, 5xvo:K, 5xvo:L, 5xvo:D, 5xvp:A, 5xvp:B, 5xvp:C, 5xvp:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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