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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTY
KFYCSPHQGAGMVGKVTVN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ag6:A 99 99 0.9899 0.9899 0.9899 6.14e-68 1oow:A, 2pcf:A, 1tef:A, 1tef:B, 1teg:A, 1teg:B, 1ylb:B
2 9pcy:A 99 99 0.8384 0.8384 0.8384 1.94e-57
3 6yez:P 99 99 0.8081 0.8081 0.8081 9.02e-56 6zoo:P
4 1byo:A 99 98 0.7879 0.7879 0.7959 4.94e-55 1byo:B, 1byp:A
5 1jxg:A 100 99 0.7677 0.7600 0.7677 1.69e-53 4dp7:X, 4dp8:X, 4dp9:X, 4dpa:X, 4dpb:X, 4dpc:X, 1jxg:B, 3pcy:A, 4pcy:A, 5pcy:A, 6pcy:A, 1plc:A, 1pnc:A, 1pnd:A, 1tkw:A
6 4dp0:X 99 99 0.7677 0.7677 0.7677 2.15e-53 4dp1:X, 4dp2:X, 4dp4:X, 4dp5:X, 4dp6:X
7 1pla:A 97 98 0.6970 0.7113 0.7041 4.09e-45 1plb:A
8 2plt:A 98 97 0.5960 0.6020 0.6082 1.04e-37 7zqe:M
9 7pcy:A 98 97 0.5758 0.5816 0.5876 3.70e-34
10 1iuz:A 98 97 0.5758 0.5816 0.5876 2.11e-33
11 1j5c:A 98 98 0.4545 0.4592 0.4592 2.14e-23 1j5d:A, 1jxd:A, 1jxf:A, 1pcs:A
12 4r0o:A 106 99 0.3939 0.3679 0.3939 6.86e-23 1baw:A, 1baw:B, 1baw:C, 3bqv:A, 3cvb:A, 3cvb:B, 3cvc:A, 3cvd:A, 3cvd:B, 3cvd:C, 2q5b:A, 2q5b:B, 2q5b:C, 4r0o:B, 4r0o:C, 4r0o:D, 2w88:A, 2w88:B, 2w88:C, 2w8c:A, 2w8c:B
13 1bxu:A 91 99 0.3939 0.4286 0.3939 6.43e-22 1bxv:A
14 2gim:A 106 100 0.4545 0.4245 0.4500 8.32e-21 2cj3:A, 2cj3:B, 1fa4:A, 2gim:C, 1nin:A, 1tu2:A
15 1b3i:A 97 98 0.4141 0.4227 0.4184 1.67e-20 2b3i:A, 2jxm:A
16 2bz7:A 102 104 0.3838 0.3725 0.3654 3.43e-16 2bzc:A, 1kdi:A, 1kdj:A
17 6akn:A 124 99 0.3939 0.3145 0.3939 3.13e-12 6akn:B, 1bqk:A, 1bqr:A, 8hm9:A, 8hm9:B, 6ifp:A, 6ifp:C, 2jkw:A, 2jkw:B, 2ux6:A, 2ux7:A, 2uxf:A, 2uxg:A, 5wv4:A, 5wv4:B, 5xmo:A, 5y23:A, 5y23:B, 4yl4:A, 5ysg:A, 5ysg:B, 5ysg:C, 5ysg:D, 5yw3:A, 5yw3:B, 5yw3:C, 5yw3:D, 5z0x:A, 5z0x:B, 1zia:A, 1zib:A, 5ztd:A, 5ztd:B
18 3c75:A 106 91 0.2828 0.2642 0.3077 5.45e-08 3c75:B, 1id2:A, 1id2:B, 1id2:C
19 1adw:A 123 98 0.3333 0.2683 0.3367 1.06e-07 1adw:B, 4bwt:A, 4bwt:B, 4bwu:A, 4bwu:B, 4bxv:A, 4bxv:B, 3erx:A, 3erx:B
20 8k9n:A 125 102 0.2929 0.2320 0.2843 3.22e-07 8k9p:A, 3nyk:A, 2p80:D, 1paz:A, 3paz:A, 4paz:A, 5paz:A, 6paz:A, 7paz:A, 8paz:A, 1py0:A, 1pza:A, 1pzb:A, 4rh4:A, 5x31:A, 5x31:B
21 3tu6:A 127 100 0.3131 0.2441 0.3100 5.01e-07
22 1aac:A 105 81 0.2727 0.2571 0.3333 7.47e-06 1aan:A, 1bxa:A, 2gb2:A, 2gba:A, 2gc4:C, 2gc4:G, 2gc4:K, 2gc4:O, 2idq:A, 2ids:A, 2idt:A, 2idu:A, 3ie9:A, 3iea:A, 2j55:A, 2j55:B, 2j56:A, 2j56:B, 2j57:A, 2j57:B, 2j57:C, 2j57:D, 3l45:A, 1mda:A, 1mda:B, 1mg2:C, 1mg2:G, 1mg2:K, 1mg2:O, 1mg3:C, 1mg3:G, 1mg3:K, 1mg3:O, 2mta:A, 2ov0:A, 4p5r:A, 4p5s:A, 3ply:A, 3ply:B, 3ply:C, 3ply:D, 2qdv:A, 2qdw:A, 2rac:A, 3rym:A, 3rym:C, 3rym:B, 3rym:D, 1sf3:A, 1sf5:A, 1sfd:A, 1sfd:B, 1sfh:A, 1sfh:B, 1t5k:A, 1t5k:B, 1t5k:C, 1t5k:D
23 1pmy:A 123 99 0.3030 0.2439 0.3030 1.47e-04
24 5fc9:A 95 85 0.2424 0.2526 0.2824 7.15e-04 5fc9:B, 5fc9:C, 5fc9:D
25 5b1j:C 124 88 0.2828 0.2258 0.3182 8.59e-04 3ef4:A, 3ef4:B, 3ef4:C
26 6hbe:C 427 81 0.2424 0.0562 0.2963 0.23 6hbe:A, 6hbe:B
27 4usc:A 303 58 0.1515 0.0495 0.2586 0.98 4usc:B
28 2grj:A 179 55 0.1616 0.0894 0.2909 1.1 2grj:B, 2grj:C, 2grj:D, 2grj:E, 2grj:F, 2grj:G, 2grj:H
29 4hcf:B 96 40 0.1515 0.1562 0.3750 2.1 4hcf:A, 4hcg:A, 4hcg:B
30 4b4o:A 295 67 0.2020 0.0678 0.2985 2.2 4b4o:B, 4b4o:C, 4b4o:D, 4b4o:E, 4b4o:F, 4b4o:G, 4b4o:H
31 2q9u:A 409 32 0.1010 0.0244 0.3125 3.9 2q9u:B
32 2rau:A 350 25 0.1212 0.0343 0.4800 4.1
33 7kwo:A 1200 50 0.1616 0.0133 0.3200 5.7
34 7x5j:C 256 40 0.1515 0.0586 0.3750 7.5 7x5j:D, 7x5j:A, 7x5j:E, 7x5j:B, 7x5j:F
35 7syv:x 627 51 0.1919 0.0303 0.3725 7.8 8pj3:0, 8pj4:0, 8pj5:0, 7syw:x, 7syx:x, 7tql:1, 4ujc:AB, 4ujd:BB
36 5ngy:A 1265 54 0.1515 0.0119 0.2778 9.5 6htv:A, 5lfc:A, 5lfc:B, 5ngy:B, 5o8l:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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